View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_16 (Length: 370)
Name: NF20497_low_16
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_16 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 176 - 360
Target Start/End: Original strand, 1310350 - 1310534
Alignment:
| Q |
176 |
caaacattcaccccaaagagacaagtaagaagtatttcaacctcttttccttcatctttacaacttcatagctattattattagaccaaaactattcctt |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
1310350 |
caaacattcaccccaaagagacaagtaagaagtatttcaacctcttttccttcatctttacaatttcataactattattattagaccaaaactattcctt |
1310449 |
T |
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| Q |
276 |
tctagagaacctaccttttctaccatcaaattaaatcttggtttttgttgagaaaaaattgatttattctaagtgtagatttctt |
360 |
Q |
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| T |
1310450 |
tctagagaacctaccttttctaccatcaaattaaatcttggtttttgttgagaaaacattgatttattctaagtgtagatttctt |
1310534 |
T |
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Target: scaffold0003 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 9132 - 9239
Alignment:
| Q |
18 |
ccatattgtgaggaaataagttagtgggagaattattagtaaccg-ttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaa |
116 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9132 |
ccatattgttaggaaataagttagtgggagaattattagtaaccggttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaa |
9231 |
T |
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| Q |
117 |
atacatag |
124 |
Q |
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|||||||| |
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| T |
9232 |
atacatag |
9239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 16420420 - 16420527
Alignment:
| Q |
18 |
ccatattgtgaggaaataagttagtgggagaattattagtaaccg-ttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaa |
116 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16420420 |
ccatattgttaggaaataagttagtgggagaattattagtaaccggttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaa |
16420519 |
T |
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| Q |
117 |
atacatag |
124 |
Q |
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|||||||| |
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| T |
16420520 |
atacatag |
16420527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 5538345 - 5538238
Alignment:
| Q |
18 |
ccatattgtgaggaaataagttagtgggagaattattagtaacc-gttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaa |
116 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5538345 |
ccatattgttaggaaataagctagtgggagaattattagtaaccagttcctattccttttcacacacacccctttctatactttgaagaacaaaaacaaa |
5538246 |
T |
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| Q |
117 |
atacatag |
124 |
Q |
| |
|
|||||||| |
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|
| T |
5538245 |
atacatag |
5538238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 44667720 - 44667810
Alignment:
| Q |
36 |
agttagtgggagaattattag--taaccg-ttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag |
124 |
Q |
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||||||||||||| ||||||| |||||| ||||||||| ||||||||||||| | || |||| ||||||||||||||||||||| |||||| |
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| T |
44667720 |
agttagtgggagagttattagaataaccggttcctattcattttcacacacactcatt-ctatgctttgaagaacaaaaacaaaagacatag |
44667810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 6816946 - 6816995
Alignment:
| Q |
62 |
gttcctattctttttcacacacacccctttctatactttgaagaacaaaaa |
112 |
Q |
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|||| |||||||||| |||||||||| || ||||||||||||||||||||| |
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| T |
6816946 |
gttcttattctttttaacacacacccatt-ctatactttgaagaacaaaaa |
6816995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 3508666 - 3508727
Alignment:
| Q |
63 |
ttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag |
124 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3508666 |
ttcctactctttttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag |
3508727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 34518791 - 34518725
Alignment:
| Q |
57 |
taaccgttcctattctttttcacacacacccctttctatactttgaagaacaaaaacaaaatacatag |
124 |
Q |
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|||| ||||||||||||||||||||| |||| || |||||||||||||||||||| |||||||||||| |
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| T |
34518791 |
taacggttcctattctttttcacacatacccatt-ctatactttgaagaacaaaatcaaaatacatag |
34518725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 28657313 - 28657267
Alignment:
| Q |
62 |
gttcctattctttttcacacacacccctttctatactttgaagaacaaaa |
111 |
Q |
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| T |
28657313 |
gttcctattctttttcacacac---ccattctatactttgaagaacaaaa |
28657267 |
T |
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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 189082 - 189034
Alignment:
| Q |
62 |
gttcctattctttttcacacacacccctttctatactttgaagaacaaaa |
111 |
Q |
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||||||||| ||||||||||| |||| || |||||||||||||||||||| |
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| T |
189082 |
gttcctattgtttttcacacatacccatt-ctatactttgaagaacaaaa |
189034 |
T |
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