View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_18 (Length: 358)
Name: NF20497_low_18
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 2843168 - 2843495
Alignment:
| Q |
15 |
tatatataggaagagtctagtaacgttaacaaaagtacagcttctcaaagcaaagaaacttgtcaagtacagaaattgaaatgtagtacaaaatcaatgg |
114 |
Q |
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| T |
2843168 |
tatatataggaagagtctagtaacgttaacaaaagtacagcttctcaaagcaaagaaacttgtcaagtacagaaattgaaatgtagtacaaaatcaatgg |
2843267 |
T |
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| Q |
115 |
aagttgatgtactgcattgcttttacaagtaatttcattcttatacatataatagcagagccagatgtaatagttttacaaggaaatgtggatctcatta |
214 |
Q |
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| T |
2843268 |
aagttgatgtactgcattgcttttacaagtaatttcattcttatacatataatagcagagccagatgtaatagttttagaaggaaatgtggatctcatta |
2843367 |
T |
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| Q |
215 |
taaagttgtacatgtttacattgtgaattaattccccatattggagaaacatcattgagtgcagcgttgatgaaatcttatgtagcgtctagctatctca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
2843368 |
taaagttgtacatgtttacattgtgaattaattccccatattggagaaacatcattgagtgcagcgttgatgaaatcttatgtagcatctagctatctta |
2843467 |
T |
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| Q |
315 |
tagatatcaaatattgcatgcttaattt |
342 |
Q |
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| T |
2843468 |
tagatatcaaatattgcatgcttaattt |
2843495 |
T |
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