View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20497_low_19 (Length: 344)

Name: NF20497_low_19
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20497_low_19
NF20497_low_19
[»] chr2 (14 HSPs)
chr2 (286-344)||(7431903-7431961)
chr2 (192-228)||(7431812-7431848)
chr2 (289-333)||(12734921-12734965)
chr2 (289-330)||(8181004-8181045)
chr2 (286-343)||(45077940-45077997)
chr2 (289-333)||(227410-227454)
chr2 (286-322)||(1765625-1765661)
chr2 (289-333)||(3635340-3635384)
chr2 (289-333)||(4807816-4807860)
chr2 (289-333)||(12474944-12474988)
chr2 (289-333)||(17670689-17670733)
chr2 (289-333)||(28508899-28508943)
chr2 (289-333)||(30306253-30306297)
chr2 (289-333)||(38452703-38452747)
[»] chr6 (7 HSPs)
chr6 (289-328)||(10098913-10098952)
chr6 (289-333)||(28085597-28085641)
chr6 (289-333)||(3206476-3206520)
chr6 (289-325)||(30031485-30031521)
chr6 (289-333)||(31819052-31819096)
chr6 (289-333)||(34143782-34143826)
chr6 (289-333)||(34156398-34156442)
[»] chr5 (9 HSPs)
chr5 (289-343)||(14667982-14668036)
chr5 (289-343)||(20456984-20457038)
chr5 (289-333)||(408511-408555)
chr5 (289-333)||(2915513-2915557)
chr5 (289-325)||(9234115-9234151)
chr5 (289-333)||(13561403-13561447)
chr5 (289-333)||(29816603-29816647)
chr5 (289-333)||(30213796-30213840)
chr5 (289-333)||(38685188-38685232)
[»] chr7 (15 HSPs)
chr7 (289-333)||(22349841-22349885)
chr7 (289-333)||(37618166-37618210)
chr7 (289-330)||(31005429-31005470)
chr7 (289-333)||(2885739-2885783)
chr7 (289-333)||(6375089-6375133)
chr7 (289-333)||(11594181-11594225)
chr7 (289-333)||(12841292-12841336)
chr7 (289-333)||(28208345-28208389)
chr7 (289-333)||(31682619-31682663)
chr7 (289-333)||(35906218-35906262)
chr7 (289-333)||(36652213-36652257)
chr7 (289-333)||(39906389-39906433)
chr7 (289-333)||(41483708-41483752)
chr7 (289-333)||(45836499-45836543)
chr7 (289-333)||(48919333-48919377)
[»] chr3 (7 HSPs)
chr3 (289-333)||(31566178-31566222)
chr3 (286-328)||(7278690-7278732)
chr3 (289-343)||(24778626-24778680)
chr3 (289-325)||(2133629-2133665)
chr3 (289-333)||(5169053-5169097)
chr3 (289-333)||(12096722-12096766)
chr3 (289-333)||(21862758-21862802)
[»] chr1 (16 HSPs)
chr1 (289-333)||(44751705-44751749)
chr1 (289-343)||(7124352-7124406)
chr1 (289-343)||(10200323-10200377)
chr1 (289-333)||(1210966-1211010)
chr1 (289-333)||(4590549-4590593)
chr1 (289-325)||(7210944-7210980)
chr1 (289-325)||(25715343-25715379)
chr1 (289-333)||(25979248-25979292)
chr1 (289-333)||(29577473-29577517)
chr1 (289-333)||(30202147-30202191)
chr1 (289-337)||(32404543-32404591)
chr1 (289-333)||(43028825-43028869)
chr1 (289-333)||(43240396-43240440)
chr1 (289-325)||(45935379-45935415)
chr1 (289-333)||(46423233-46423277)
chr1 (289-333)||(49347410-49347454)
[»] chr4 (14 HSPs)
chr4 (289-324)||(50471757-50471792)
chr4 (289-328)||(56375516-56375555)
chr4 (289-343)||(26024867-26024921)
chr4 (289-330)||(47265212-47265253)
chr4 (289-333)||(4441074-4441118)
chr4 (289-333)||(19969402-19969446)
chr4 (289-333)||(21528509-21528553)
chr4 (289-333)||(27450197-27450241)
chr4 (289-333)||(31959831-31959875)
chr4 (289-325)||(39708662-39708698)
chr4 (289-333)||(49939751-49939795)
chr4 (289-333)||(50238632-50238676)
chr4 (289-333)||(50238718-50238762)
chr4 (289-333)||(52569532-52569576)
[»] chr8 (5 HSPs)
chr8 (289-343)||(45419446-45419500)
chr8 (290-343)||(26642713-26642766)
chr8 (289-333)||(11523740-11523784)
chr8 (289-333)||(12491155-12491199)
chr8 (289-333)||(14742099-14742143)
[»] scaffold1318 (1 HSPs)
scaffold1318 (289-333)||(552-596)
[»] scaffold0168 (1 HSPs)
scaffold0168 (289-333)||(28906-28950)


Alignment Details
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 7431903 - 7431961
Alignment:
Q  286 gctttatcccactaagtgaggtcgattacatggatcaaatgacaccattatgatctatt 344  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  7431903 gctttatcccactaagtgaggtcggttgcatggatcaaatgacaccattatgatctatt 7431961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 7431812 - 7431848
Alignment:
Q  192 tttgcatcattggcatttttaagcatgattcagcctg 228  Q
    |||||||||||||||||||||||||||||||||||||    
T  7431812 tttgcatcattggcatttttaagcatgattcagcctg 7431848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 12734965 - 12734921
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||| |||||||||||||| |||||||    
T  12734965 ttatcccactaagtggggtcgactacatggatcaaattacaccat 12734921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 8181045 - 8181004
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacac 330  Q
    ||||||||||||||| |||||  |||||||||||||||||||    
T  8181045 ttatcccactaagtggggtcggctacatggatcaaatgacac 8181004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 45077997 - 45077940
Alignment:
Q  286 gctttatcccactaagtgaggtcgattacatggatcaaatgacaccattatgatctat 343  Q
    |||||||| ||||||||| ||||| ||||||||||||||| |  |||||||| |||||    
T  45077997 gctttatctcactaagtggggtcggttacatggatcaaattatgccattatgttctat 45077940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 227454 - 227410
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  227454 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 227410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 1765625 - 1765661
Alignment:
Q  286 gctttatcccactaagtgaggtcgattacatggatca 322  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  1765625 gctttatcctactaagtgaggtcgactacatggatca 1765661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 3635340 - 3635384
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  3635340 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 3635384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 4807860 - 4807816
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  4807860 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 4807816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 12474944 - 12474988
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  12474944 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 12474988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 17670733 - 17670689
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  17670733 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 17670689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 28508943 - 28508899
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  28508943 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 28508899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 30306297 - 30306253
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  30306297 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 30306253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 38452703 - 38452747
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  |||||||||| |||||||||||    
T  38452703 ttatcccactaagtggggtcggctacatggatcgaatgacaccat 38452747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 10098913 - 10098952
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgac 328  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  10098913 ttatcccactaagtggggtcgattacatggatcaaatgac 10098952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 28085641 - 28085597
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||    
T  28085641 ttatcccactaagtggggtcggctacatggatcaaatgacaccat 28085597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 3206476 - 3206520
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  3206476 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 3206520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 30031521 - 30031485
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaat 325  Q
    |||||||||||||||||||||  ||||||||||||||    
T  30031521 ttatcccactaagtgaggtcggctacatggatcaaat 30031485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 31819096 - 31819052
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  31819096 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 31819052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 34143782 - 34143826
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    |||||||| |||||| |||||| ||||||||||||||||| ||||    
T  34143782 ttatcccaataagtggggtcgactacatggatcaaatgacgccat 34143826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 34156398 - 34156442
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    |||||||| |||||| |||||| ||||||||||||||||| ||||    
T  34156398 ttatcccaataagtggggtcgactacatggatcaaatgacgccat 34156442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 14668036 - 14667982
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccattatgatctat 343  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||| ||| |||||    
T  14668036 ttatcccactaagtggggtcggttacatggatcaaattacaccataatgttctat 14667982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 20457038 - 20456984
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccattatgatctat 343  Q
    ||||||||||||||| |||||  ||||||||||||||||| |||| ||| |||||    
T  20457038 ttatcccactaagtggggtcggctacatggatcaaatgacgccataatgttctat 20456984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 408511 - 408555
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  408511 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 408555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 2915513 - 2915557
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  2915513 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 2915557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 9234151 - 9234115
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaat 325  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  9234151 ttatcccactaagtggggtcggttacatggatcaaat 9234115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 13561403 - 13561447
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  13561403 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 13561447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 29816647 - 29816603
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  29816647 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 29816603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 30213840 - 30213796
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  30213840 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 30213796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 38685232 - 38685188
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  38685232 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 38685188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 22349885 - 22349841
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||    
T  22349885 ttatcccactaagtggggtcgactacatggatcaaatgacgccat 22349841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 37618210 - 37618166
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||    
T  37618210 ttatcccactaagtggggtcggctacatggatcaaatgacaccat 37618166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 31005470 - 31005429
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacac 330  Q
    ||||||||||||||| |||||  |||||||||||||||||||    
T  31005470 ttatcccactaagtggggtcggctacatggatcaaatgacac 31005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 2885739 - 2885783
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  |||||||||||||| |||||||    
T  2885739 ttatcccactaagtggggtcggctacatggatcaaattacaccat 2885783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 6375133 - 6375089
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  6375133 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 6375089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 11594225 - 11594181
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  11594225 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 11594181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 12841292 - 12841336
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  12841292 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 12841336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 28208345 - 28208389
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  28208345 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 28208389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 31682619 - 31682663
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  31682619 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 31682663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 35906218 - 35906262
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  35906218 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 35906262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 36652257 - 36652213
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  36652257 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 36652213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 39906389 - 39906433
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  39906389 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 39906433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 41483752 - 41483708
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||| ||||||||||    
T  41483752 ttatcccactaagtggggtcggctacatggatcatatgacaccat 41483708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 45836499 - 45836543
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  45836499 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 45836543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 48919377 - 48919333
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    |||||||| |||||| |||||| ||||||||||||||||| ||||    
T  48919377 ttatcccattaagtggggtcgactacatggatcaaatgacgccat 48919333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 31566178 - 31566222
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||    
T  31566178 ttatcccactaagtggggtcggctacatggatcaaatgacaccat 31566222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 7278732 - 7278690
Alignment:
Q  286 gctttatcccactaagtgaggtcgattacatggatcaaatgac 328  Q
    |||||||||||||||||| |||||  |||||||||||||||||    
T  7278732 gctttatcccactaagtggggtcggctacatggatcaaatgac 7278690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 24778626 - 24778680
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccattatgatctat 343  Q
    ||||||||||||||| |||||  |||||||||||||| ||||||| ||| |||||    
T  24778626 ttatcccactaagtggggtcggctacatggatcaaattacaccataatgttctat 24778680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 2133629 - 2133665
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaat 325  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  2133629 ttatcccactaagtggggtcgagtacatggatcaaat 2133665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 5169097 - 5169053
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  5169097 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 5169053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 12096722 - 12096766
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  12096722 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 12096766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 21862758 - 21862802
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||| ||||||||| |||||  ||||||||||||||||||||||    
T  21862758 ttatctcactaagtggggtcggctacatggatcaaatgacaccat 21862802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 44751749 - 44751705
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    |||||||||||||||||||||  ||||||||||||||||| ||||    
T  44751749 ttatcccactaagtgaggtcggctacatggatcaaatgacgccat 44751705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 7124406 - 7124352
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccattatgatctat 343  Q
    ||||||||||||||||||||   ||||||||||||| |||||||| ||| |||||    
T  7124406 ttatcccactaagtgaggtcagctacatggatcaaacgacaccataatgctctat 7124352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 10200323 - 10200377
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccattatgatctat 343  Q
    |||||||| ||||||||||||  |||||||||||||| ||||||| ||| |||||    
T  10200323 ttatcccattaagtgaggtcggctacatggatcaaattacaccatgatgttctat 10200377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 1211010 - 1210966
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  1211010 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 1210966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 4590549 - 4590593
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  |||||||||||||| |||||||    
T  4590549 ttatcccactaagtggggtcggctacatggatcaaattacaccat 4590593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 7210944 - 7210980
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaat 325  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  7210944 ttatcccactaagtggggtcggttacatggatcaaat 7210980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 25715343 - 25715379
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaat 325  Q
    |||||||||||||||||||||  ||||||||||||||    
T  25715343 ttatcccactaagtgaggtcggctacatggatcaaat 25715379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 25979248 - 25979292
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  25979248 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 25979292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 29577517 - 29577473
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  29577517 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 29577473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 30202147 - 30202191
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  30202147 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 30202191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 32404543 - 32404591
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccattatg 337  Q
    ||||||||||||||| |||||  |||||||||||||| || ||||||||    
T  32404543 ttatcccactaagtggggtcggctacatggatcaaattacgccattatg 32404591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 43028825 - 43028869
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||||    
T  43028825 ttatcccactaagtggggtcgcttacatgaatcaaacgacaccat 43028869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 43240396 - 43240440
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    |||||||||||||||||||||  |||||| |||||||||| ||||    
T  43240396 ttatcccactaagtgaggtcggctacatgaatcaaatgacgccat 43240440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 45935415 - 45935379
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaat 325  Q
    ||||||||||||||||||||  |||||||||||||||    
T  45935415 ttatcccactaagtgaggtccgttacatggatcaaat 45935379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 46423233 - 46423277
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  46423233 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 46423277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 49347410 - 49347454
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  49347410 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 49347454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 50471792 - 50471757
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaa 324  Q
    ||||||||||||||| ||||||||||||||||||||    
T  50471792 ttatcccactaagtggggtcgattacatggatcaaa 50471757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 56375555 - 56375516
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgac 328  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  56375555 ttatcccactaagtgaggtcggctacatggatcaaatgac 56375516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 26024867 - 26024921
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccattatgatctat 343  Q
    |||||||||||||||||||||  ||||||||| |||| ||||||| ||| |||||    
T  26024867 ttatcccactaagtgaggtcggctacatggataaaattacaccataatgttctat 26024921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 47265212 - 47265253
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacac 330  Q
    |||||||||||||||||||||  |||||||||||||| ||||    
T  47265212 ttatcccactaagtgaggtcggctacatggatcaaattacac 47265253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 4441118 - 4441074
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  4441118 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 4441074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 19969446 - 19969402
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  19969446 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 19969402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 21528553 - 21528509
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||| ||||||    
T  21528553 ttatcccactaagtggggtcggctacatggatcaaatgccaccat 21528509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 27450197 - 27450241
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  27450197 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 27450241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 31959831 - 31959875
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  31959831 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 31959875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 39708698 - 39708662
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaat 325  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  39708698 ttatcccactaagtggggtcgactacatggatcaaat 39708662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 49939751 - 49939795
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  49939751 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 49939795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 50238632 - 50238676
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  50238632 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 50238676  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 50238718 - 50238762
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  50238718 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 50238762  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 52569532 - 52569576
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  52569532 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 52569576  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 45419500 - 45419446
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccattatgatctat 343  Q
    ||||||||||||||| |||||  |||||||||||||| ||||||| ||| |||||    
T  45419500 ttatcccactaagtggggtcggctacatggatcaaattacaccataatgttctat 45419446  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 26642766 - 26642713
Alignment:
Q  290 tatcccactaagtgaggtcgattacatggatcaaatgacaccattatgatctat 343  Q
    |||||||||||||  |||| | ||||||||||||| |||||||| |||||||||    
T  26642766 tatcccactaagttgggtcaactacatggatcaaacgacaccataatgatctat 26642713  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 11523740 - 11523784
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  11523740 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 11523784  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 12491155 - 12491199
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  12491155 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 12491199  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 14742099 - 14742143
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  14742099 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 14742143  T

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Target: scaffold1318 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 596 - 552
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  596 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 552  T

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Target: scaffold0168 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 28906 - 28950
Alignment:
Q  289 ttatcccactaagtgaggtcgattacatggatcaaatgacaccat 333  Q
    ||||||||||||||| |||||  ||||||||||||||||| ||||    
T  28906 ttatcccactaagtggggtcggctacatggatcaaatgacgccat 28950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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