View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_20 (Length: 337)
Name: NF20497_low_20
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 28 - 324
Target Start/End: Original strand, 37218484 - 37218777
Alignment:
| Q |
28 |
aatgggattaaaactgttacctgctacttaatgttggggaagtattactattagtaattatagaagcacatgagtttgaaagttgttcaaaattgcttcc |
127 |
Q |
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| T |
37218484 |
aatggcattaaaactgttacctgctacttaatgttggggaagtattactattact---tatagaagcacatgagtttgaaagttgttcaaagttgcttcc |
37218580 |
T |
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| Q |
128 |
atgtgtgtcggatttgtgtacttgttgtaagacatgagcttgatgttggttgctcaaaccatccagacaagtttctccattaatgtcattcaattcgaca |
227 |
Q |
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| T |
37218581 |
atgtgtgtcggatttgtgtacttgttgtgagacatgagcttgatgttggttgctcaaaccatccagacaagtttctccattaatgtcattcaattcgaaa |
37218680 |
T |
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| Q |
228 |
tcacataggtttattatttgatcatagagtggcaaactagctcttgcacgtttctttgttcttatattatggtagttatctatctcatttcctcttc |
324 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37218681 |
tcacatagatttattatttgatcatagagtggcaaactagctcttgcacgtttctttgttcttatattatggtagttatctatctcatttcctcttc |
37218777 |
T |
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