View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20497_low_21 (Length: 326)

Name: NF20497_low_21
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20497_low_21
NF20497_low_21
[»] chr3 (2 HSPs)
chr3 (1-308)||(53924383-53924691)
chr3 (3-39)||(899881-899917)
[»] chr1 (12 HSPs)
chr1 (8-44)||(35190374-35190410)
chr1 (4-39)||(45525474-45525509)
chr1 (4-39)||(45531575-45531610)
chr1 (3-44)||(35476304-35476345)
chr1 (8-44)||(35147366-35147402)
chr1 (8-44)||(35199934-35199970)
chr1 (3-39)||(35204903-35204939)
chr1 (6-44)||(35219063-35219101)
chr1 (6-44)||(35224915-35224953)
chr1 (11-41)||(35270441-35270471)
chr1 (10-39)||(35295988-35296017)
chr1 (8-44)||(35215986-35216022)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 53924383 - 53924691
Alignment:
Q  1 ttaaatttctttcttgaaggaatagaagttaggcctaagtaagagtgtaagacaatcaagcaatattagttgaactatgcaagtggttttacatcttaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53924383 ttaaatttctttcttgaaggaatagaagttaggcctaagtaagagtgtaagacaatcaagcaatattagttgaactatgcaagtggttttacatcttaga 53924482  T
Q  101 tgagatgaatattgttctctgttatgtattttgttactcaaatttctacttgattttgagaatcaaagtcggggtcgtttataaacacccgctctcatta 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53924483 tgagatgaatattgttctctgttatgtattttgttgctcaaatttctacttgattttgagaatcaaagtcggggtcgtttataaacacccgctctcatta 53924582  T
Q  201 gaacaatacatcaagaaaacagttggaacacctgaatgttaatgacacggccatcttcattc-ttttaaaggagatgaagtctgatagttctgtggtaaa 299  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53924583 gaacattacatcaagaaaacagttggaacacttgaatgttaatgacacagccatcttcattctttttaaaggagatgaagtctgatagttctgtggtaaa 53924682  T
Q  300 gctgaaaat 308  Q
    |||||||||    
T  53924683 gctgaaaat 53924691  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 899881 - 899917
Alignment:
Q  3 aaatttctttcttgaaggaatagaagttaggcctaag 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  899881 aaatttctttcttgaaggaatagaagttaggcctaag 899917  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 35190410 - 35190374
Alignment:
Q  8 tctttcttgaaggaatagaagttaggcctaagtaaga 44  Q
    |||||||||||||||||||||||||||||||||||||    
T  35190410 tctttcttgaaggaatagaagttaggcctaagtaaga 35190374  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 45525509 - 45525474
Alignment:
Q  4 aatttctttcttgaaggaatagaagttaggcctaag 39  Q
    ||||||||||||||||||||||||||||||||||||    
T  45525509 aatttctttcttgaaggaatagaagttaggcctaag 45525474  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 45531610 - 45531575
Alignment:
Q  4 aatttctttcttgaaggaatagaagttaggcctaag 39  Q
    ||||||||||||||||||||||||||||||||||||    
T  45531610 aatttctttcttgaaggaatagaagttaggcctaag 45531575  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 35476345 - 35476304
Alignment:
Q  3 aaatttctttcttgaaggaatagaagttaggcctaagtaaga 44  Q
    |||||||||||||||||||||||||||||| |||||| ||||    
T  35476345 aaatttctttcttgaaggaatagaagttagacctaaggaaga 35476304  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 35147402 - 35147366
Alignment:
Q  8 tctttcttgaaggaatagaagttaggcctaagtaaga 44  Q
    ||||| |||||||||||||||||||||||||||||||    
T  35147402 tctttgttgaaggaatagaagttaggcctaagtaaga 35147366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 35199970 - 35199934
Alignment:
Q  8 tctttcttgaaggaatagaagttaggcctaagtaaga 44  Q
    |||||||||||||||||||||| ||||||||||||||    
T  35199970 tctttcttgaaggaatagaagtcaggcctaagtaaga 35199934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 35204939 - 35204903
Alignment:
Q  3 aaatttctttcttgaaggaatagaagttaggcctaag 39  Q
    ||||||||||||||||||||||||| |||||||||||    
T  35204939 aaatttctttcttgaaggaatagaacttaggcctaag 35204903  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 35219101 - 35219063
Alignment:
Q  6 tttctttcttgaaggaatagaagttaggcctaagtaaga 44  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  35219101 tttctttgttgaaggaatagaagttaggcctaaggaaga 35219063  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 35224953 - 35224915
Alignment:
Q  6 tttctttcttgaaggaatagaagttaggcctaagtaaga 44  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  35224953 tttctttgttgaaggaatagaagttaggcctaaggaaga 35224915  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 35270471 - 35270441
Alignment:
Q  11 ttcttgaaggaatagaagttaggcctaagta 41  Q
    |||||||||||||||||||||||||||||||    
T  35270471 ttcttgaaggaatagaagttaggcctaagta 35270441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 35295988 - 35296017
Alignment:
Q  10 tttcttgaaggaatagaagttaggcctaag 39  Q
    ||||||||||||||||||||||||||||||    
T  35295988 tttcttgaaggaatagaagttaggcctaag 35296017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 35216022 - 35215986
Alignment:
Q  8 tctttcttgaaggaatagaagttaggcctaagtaaga 44  Q
    |||| |||| |||||||||||||||||||||||||||    
T  35216022 tcttgcttgcaggaatagaagttaggcctaagtaaga 35215986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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