View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_22 (Length: 314)
Name: NF20497_low_22
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_22 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 23357811 - 23358102
Alignment:
| Q |
16 |
attctatctatcatgttttttgttgttaatttactcnnnnnnnccatcaaaatttcctctgaaacagatatcataacacaatttcttccactacatgatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23357811 |
attctatctatcatgttttttgttgttaatttactctttttttccatcaaaatttcctctgaaacagatatcataacacaatttcttccactacatgatg |
23357910 |
T |
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| Q |
116 |
gaagcaccttggtcaatggagcatttgaactgggtttcttcagtcctggtagttccacaaaccgctatgtaggaatttggttcaaaattatccctataaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
23357911 |
gaagcaccttggtcaatggagcatttgaactgggtttcttcagtcctggtagttccacaaaccgctatgtaggaatttggttcaaaactatccctttaaa |
23358010 |
T |
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| Q |
216 |
aacagttgtttgggtagccaatcgcaacaatccaatcagtgacaaatccggcatattgagcgtaaacaaagaaggaaaccttgttcttctca |
307 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23358011 |
aacagttgtttgggtagcaaatcgcgacaatccaatcagtgacaaatccggcatattgagcgtaaacaaagaaggaaaccttgttcttctca |
23358102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 306
Target Start/End: Original strand, 23551642 - 23551800
Alignment:
| Q |
148 |
ggtttcttcagtcctggtagttccacaaaccgctatgtaggaatttggttcaaaattatccctataaaaacagttgtttgggtagccaatcgcaacaatc |
247 |
Q |
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|||||||||||||| |||| |||| ||||||||||||| |||||||||| ||||| ||||| | || || || |||||||| ||||||||| | |||| |
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| T |
23551642 |
ggtttcttcagtccaggtaattccccaaaccgctatgtcggaatttggtacaaaaacatcccggttaagactgtagtttgggttgccaatcgcgataatc |
23551741 |
T |
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| Q |
248 |
caatcagtgacaaatccggcatattgagcgtaaacaaagaaggaaaccttgttcttctc |
306 |
Q |
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| T |
23551742 |
catgcaaagataactccagcaagttgataataaacgaagaaggaaaccttgttgttctc |
23551800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 253
Target Start/End: Complemental strand, 10564 - 10459
Alignment:
| Q |
148 |
ggtttcttcagtcctggtagttccacaaaccgctatgtaggaatttggttcaaaattatccctataaaaacagttgtttgggtagccaatcgcaacaatc |
247 |
Q |
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|||||||||| ||| ||||||||||| ||||||||||| |||||||||| ||||| |||||| | | || |||||||||||| |||||||| |||||| |
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| T |
10564 |
ggtttcttcaatccaggtagttccacgaaccgctatgttggaatttggtacaaaaatatcccggttagaagagttgtttgggttgccaatcgtgacaatc |
10465 |
T |
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| Q |
248 |
caatca |
253 |
Q |
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|||||| |
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| T |
10464 |
caatca |
10459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 22692438 - 22692382
Alignment:
| Q |
146 |
tgggtttcttcagtcctggtagttccacaaaccgctatgtaggaatttggttcaaaa |
202 |
Q |
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| T |
22692438 |
tgggttttttcagtccaggtagttcatcaaaccgctatgtcggactttggtacaaaa |
22692382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 28417542 - 28417646
Alignment:
| Q |
146 |
tgggtttcttcagtcctggtagttccacaaaccgctatgtaggaatttggttcaaaattatccctataaaaacagttgtttgggtagccaatcgcaacaa |
245 |
Q |
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||||||||||||| || |||| ||| |||||||||||||||||| |||| ||||| |||||| | || ||| |||||||| || ||||| ||||| |
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| T |
28417542 |
tgggtttcttcagacccggtaagtccttaaaccgctatgtaggaatatggtacaaaaatatccccgttcgaagagtggtttgggttgcaaatcgaaacaa |
28417641 |
T |
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| Q |
246 |
tccaa |
250 |
Q |
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||||| |
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| T |
28417642 |
tccaa |
28417646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 28426075 - 28426179
Alignment:
| Q |
146 |
tgggtttcttcagtcctggtagttccacaaaccgctatgtaggaatttggttcaaaattatccctataaaaacagttgtttgggtagccaatcgcaacaa |
245 |
Q |
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||||||||||||| || |||| ||| |||||||||||||||||| |||| ||||| |||||| | || ||| |||||||| || ||||| ||||| |
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| T |
28426075 |
tgggtttcttcagacccggtaagtccttaaaccgctatgtaggaatatggtacaaaaatatccccgttcgaagagtggtttgggttgcaaatcgaaacaa |
28426174 |
T |
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| Q |
246 |
tccaa |
250 |
Q |
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||||| |
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| T |
28426175 |
tccaa |
28426179 |
T |
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