View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20497_low_23 (Length: 294)

Name: NF20497_low_23
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20497_low_23
NF20497_low_23
[»] chr1 (9 HSPs)
chr1 (13-278)||(5721744-5722009)
chr1 (13-278)||(11359361-11359627)
chr1 (172-238)||(23541119-23541185)
chr1 (102-178)||(52975688-52975764)
chr1 (106-142)||(1280528-1280564)
chr1 (106-139)||(49105523-49105556)
chr1 (106-138)||(17508545-17508577)
chr1 (104-144)||(35764138-35764178)
chr1 (102-138)||(43904365-43904401)
[»] chr2 (5 HSPs)
chr2 (13-278)||(39814424-39814689)
chr2 (13-168)||(12987364-12987526)
chr2 (172-237)||(18955368-18955433)
chr2 (103-143)||(25059704-25059744)
chr2 (103-143)||(25064503-25064543)
[»] chr8 (4 HSPs)
chr8 (13-278)||(36241109-36241374)
chr8 (173-247)||(2411207-2411281)
chr8 (109-178)||(39367637-39367707)
chr8 (172-229)||(40254415-40254471)
[»] chr5 (7 HSPs)
chr5 (13-278)||(18690928-18691194)
chr5 (13-278)||(41108869-41109135)
chr5 (13-278)||(33215106-33215370)
chr5 (13-79)||(41109725-41109791)
chr5 (107-160)||(22726480-22726534)
chr5 (182-247)||(38563280-38563345)
chr5 (102-139)||(33214546-33214583)
[»] chr4 (7 HSPs)
chr4 (15-277)||(25542328-25542591)
chr4 (104-177)||(11840868-11840941)
chr4 (106-178)||(35612-35684)
chr4 (104-139)||(48879617-48879652)
chr4 (104-145)||(40578890-40578931)
chr4 (106-143)||(40868891-40868928)
chr4 (110-138)||(45019069-45019097)
[»] chr3 (8 HSPs)
chr3 (13-278)||(25184629-25184889)
chr3 (13-148)||(35390487-35390629)
chr3 (189-278)||(35389201-35389290)
chr3 (104-178)||(55380341-55380415)
chr3 (141-196)||(35389691-35389746)
chr3 (188-240)||(51273719-51273771)
chr3 (103-138)||(42428432-42428467)
chr3 (106-138)||(9678749-9678781)
[»] chr7 (4 HSPs)
chr7 (13-278)||(17165885-17166139)
chr7 (13-130)||(41483079-41483203)
chr7 (106-142)||(29250494-29250530)
chr7 (189-246)||(27021257-27021314)
[»] chr6 (5 HSPs)
chr6 (103-176)||(10857321-10857394)
chr6 (81-171)||(832031-832122)
chr6 (13-60)||(832201-832248)
chr6 (103-143)||(23112484-23112524)
chr6 (103-143)||(23117282-23117322)
[»] scaffold0245 (1 HSPs)
scaffold0245 (106-142)||(6206-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (106-142)||(6536-6572)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 5722009 - 5721744
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagtaccaacctctag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5722009 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagtaccaacctctag 5721910  T
Q  113 gaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctacatctttatttataatagtaactcactata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5721909 gaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctgcatctttatttataatagtaactcactata 5721810  T
Q  213 acagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaata 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5721809 acagttacatagaagttctgcagataacaattactatgtaacagttactaattaatatattaaata 5721744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 11359361 - 11359627
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagta-ccaacctcta 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11359361 gataattctatggtatttggtagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagtaaccaacctcta 11359460  T
Q  112 ggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctacatctttatttataatagtaactcactat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||| |    
T  11359461 ggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccttcccctttcctctgcatctttatttataatactaactcactgt 11359560  T
Q  212 aacagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaata 278  Q
    | |||||||||||||||||| |||||| || ||||||||||||| | ||||||||||||||||||||    
T  11359561 agcagttacatagaagttctacagatagcagttactatgtaacaattactaattaatatattaaata 11359627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 23541119 - 23541185
Alignment:
Q  172 cttttcctctacatctttatttataatagtaactcactataacagttacatagaagttctgcagata 238  Q
    |||||||| | |||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||    
T  23541119 cttttcctttgcatctttattcataatactaactccctatagcagttacatagaagttctgcagata 23541185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 52975688 - 52975764
Alignment:
Q  102 ccaacctctaggaattagagagcctagtctctcccaaaccaaccca-catacaaaatacccaatgccctcccttttcc 178  Q
    ||||||||||||||||||||||||||||||||||||| | |||| | |||| |||  ||| |||||||||||||||||    
T  52975688 ccaacctctaggaattagagagcctagtctctcccaa-ctaaccaaacataaaaataaccgaatgccctcccttttcc 52975764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 1280564 - 1280528
Alignment:
Q  106 cctctaggaattagagagcctagtctctcccaaacca 142  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1280564 cctctaggaatcagagagcctagtctctcccaaacca 1280528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 49105556 - 49105523
Alignment:
Q  106 cctctaggaattagagagcctagtctctcccaaa 139  Q
    ||||||||||| ||||||||||||||||||||||    
T  49105556 cctctaggaatcagagagcctagtctctcccaaa 49105523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 17508577 - 17508545
Alignment:
Q  106 cctctaggaattagagagcctagtctctcccaa 138  Q
    ||||||||||||||||||||| |||||||||||    
T  17508577 cctctaggaattagagagccttgtctctcccaa 17508545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 35764178 - 35764138
Alignment:
Q  104 aacctctaggaattagagagcctagtctctcccaaaccaac 144  Q
    ||||| ||||||||| |||| ||||||||||||||||||||    
T  35764178 aacctttaggaattatagagtctagtctctcccaaaccaac 35764138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 43904401 - 43904365
Alignment:
Q  102 ccaacctctaggaattagagagcctagtctctcccaa 138  Q
    ||||||||| | |||||||||||||||||||||||||    
T  43904401 ccaacctcttgaaattagagagcctagtctctcccaa 43904365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 39814689 - 39814424
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagtaccaacctctag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814689 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagtaccaacctctag 39814590  T
Q  113 gaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctacatctttatttataatagtaactcactata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39814589 gaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctgcatctttatttataatagtaactcactata 39814490  T
Q  213 acagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaata 278  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39814489 acagtttcatagaaattctgcagataacaattactatgtaacagttactaattaatatattaaata 39814424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 12987364 - 12987526
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatg------atctattattattgatataagaaagtaactgcagaaaagtac-caa 105  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||      || |||||||||||||| | |||||||||||||||||||||  |||    
T  12987364 gataattctatggtatttgggagattatagcataataataagggaatgcacgtgatgtattattattgatacaggaaagtaactgcagaaaagtaatcaa 12987463  T
Q  106 cctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccc 168  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12987464 cctctaggaatcagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccc 12987526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 18955433 - 18955368
Alignment:
Q  172 cttttcctctacatctttatttataatagtaactcactataacagttacatagaagttctgcagat 237  Q
    |||||||||| ||||||||||||||| | |||||| ||||| |||||||||| |||||||||||||    
T  18955433 cttttcctctgcatctttatttataacactaactccctatagcagttacataaaagttctgcagat 18955368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 25059744 - 25059704
Alignment:
Q  103 caacctctaggaattagagagcctagtctctcccaaaccaa 143  Q
    |||||||||||| |||||||||||||  |||||||||||||    
T  25059744 caacctctaggacttagagagcctagaatctcccaaaccaa 25059704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 25064543 - 25064503
Alignment:
Q  103 caacctctaggaattagagagcctagtctctcccaaaccaa 143  Q
    |||||||||||| |||||||||||||  |||||||||||||    
T  25064543 caacctctaggacttagagagcctagaatctcccaaaccaa 25064503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 36241109 - 36241374
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagta-ccaacctcta 111  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  36241109 gataattctatggtatttgggagat-attgcataataataagggaatgatgtattattattgatacaggaaagtaactgcagaaaagtaaccaacctcta 36241207  T
Q  112 ggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctacatctttatttataatagtaactcactat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  36241208 ggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctgcatctttatttataatactaactcactat 36241307  T
Q  212 aacagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaata 278  Q
    | ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||    
T  36241308 agcagttacatagaagttctgcagatagcatttactatgtaacagttactaattaatatattaaata 36241374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 2411207 - 2411281
Alignment:
Q  173 ttttcctctacatctttatttataatagtaactcactataacagttacatagaagttctgcagataacaattact 247  Q
    ||||||||| || |||| ||||||||| |||||| |||||  ||||||||| ||||| ||||||||||| |||||    
T  2411207 ttttcctctgcaactttgtttataatactaactccctatagaagttacataaaagttttgcagataacagttact 2411281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 39367707 - 39367637
Alignment:
Q  109 ctaggaattagagagcctagtctctcccaaaccaaccca-catacaaaatacccaatgccctcccttttcc 178  Q
    |||||||||| |||||||| ||||||| ||||||| ||| ||||||||| ||| | | |||||||||||||    
T  39367707 ctaggaattatagagcctaatctctccaaaaccaaaccaacatacaaaacacctagtcccctcccttttcc 39367637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 40254471 - 40254415
Alignment:
Q  172 cttttcctctacatctttatttataatagtaactcactataacagttacatagaagtt 229  Q
    |||||||||| |||||| ||||||||||  ||||| ||||| ||||||||||||||||    
T  40254471 cttttcctctgcatctt-atttataatatgaactccctatagcagttacatagaagtt 40254415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 18691194 - 18690928
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagta-ccaacctcta 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18691194 gataattctatggtatttggtagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagtaaccaacctcta 18691095  T
Q  112 ggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctacatctttatttataatagtaactcactat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||| |    
T  18691094 ggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccttcccctttcctctgcatctttatttataatactaactcactgt 18690995  T
Q  212 aacagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaata 278  Q
    | | |||||||||||||||| |||||| || ||||||||||||| | ||||||||||||||||||||    
T  18690994 agctgttacatagaagttctacagatagcagttactatgtaacaattactaattaatatattaaata 18690928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 41109135 - 41108869
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagta-ccaacctcta 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41109135 gataattctatggtatttggtagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagtaaccaacctcta 41109036  T
Q  112 ggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctacatctttatttataatagtaactcactat 211  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||| | |    
T  41109035 ggaattagagagcccagtctctcccaaaccaacccacatacaaaatacccaatgccttcccctttcctctgcatctttatttataatactaactcattgt 41108936  T
Q  212 aacagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaata 278  Q
    | |||||||||||||||||| |||||| || ||||||||||||| | ||||||||||||||||||||    
T  41108935 agcagttacatagaagttctacagatagcagttactatgtaacaattactaattaatatattaaata 41108869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 33215106 - 33215370
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagta-ccaacctcta 111  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||| |  ||||||||||| | ||||||||||||||||||||| ||||||||||    
T  33215106 gataattcaatggtatttgggagattattgcataataataagggaatgatgt--tattattgatacatgaaagtaactgcagaaaagtaaccaacctcta 33215203  T
Q  112 ggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctacatctttatttataatagtaactcactat 211  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  33215204 gaaattagagagcctagtctctcccaaaccaacccacatacaaattacccaatgccctcccttttcctctgcatctttatttataatactaactcactat 33215303  T
Q  212 aacagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaata 278  Q
    | ||||||||||||||||||||||||| || |||||||| |||||| ||||||||||||||||||||    
T  33215304 agcagttacatagaagttctgcagatagcagttactatgcaacagttactaattaatatattaaata 33215370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 41109791 - 41109725
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatata 79  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41109791 gataattctatggtatttggtagattattgcataataataaaggaatgatctattattattgatata 41109725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 22726534 - 22726480
Alignment:
Q  107 ctctaggaattagagagcctagtctctcccaaacc-aacccacatacaaaatacc 160  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||    
T  22726534 ctctaggaattagagagcctagtctctcccaaaccaaaccaacatacgaaatacc 22726480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 38563280 - 38563345
Alignment:
Q  182 acatctttatttataatagtaactcactataacagttacatagaagttctgcagataacaattact 247  Q
    ||||||||||||||||||  ||| | ||||| |||||||||||||||||||  ||||||| |||||    
T  38563280 acatctttatttataatacgaacaccctatagcagttacatagaagttctgtggataacagttact 38563345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 33214583 - 33214546
Alignment:
Q  102 ccaacctctaggaattagagagcctagtctctcccaaa 139  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  33214583 ccaacctttaggaattagagaccctagtctctcccaaa 33214546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 25542328 - 25542591
Alignment:
Q  15 taattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagta-ccaacctctagg 113  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||| ||||||| |||||||||||     
T  25542328 taattctatggtatttgggagattattgcataataataagggaatgatgtattattattgatacaggaaagtaactgcataaaagtaaccaacctctagc 25542427  T
Q  114 aattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctacatctttatttataatagtaactcactataa 213  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||     
T  25542428 aattagagagcctagtccctcccaaaccaacccacataaaaaatacccaatgccctcccttttcctctgcatctttatttataatactaactcactatag 25542527  T
Q  214 cagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaat 277  Q
    ||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  25542528 cagttacatagaagttctgcagatagcagttactatgtaacagttactaattaatatattaaat 25542591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 11840941 - 11840868
Alignment:
Q  104 aacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttc 177  Q
    ||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||| ||||||||||||||    
T  11840941 aacctctaggaattagagaacctagtctctcccaaaccaaactatatacaaaatacccagtgccctcccttttc 11840868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 35612 - 35684
Alignment:
Q  106 cctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcc 178  Q
    |||||||||||||||| |  |||||| ||||||||||||| || ||||||||||| || || |||||||||||    
T  35612 cctctaggaattagagggtgtagtctatcccaaaccaaccaacgtacaaaatacctaaagctctcccttttcc 35684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 48879617 - 48879652
Alignment:
Q  104 aacctctaggaattagagagcctagtctctcccaaa 139  Q
    ||||||||||| ||||||||||||||||||||||||    
T  48879617 aacctctaggacttagagagcctagtctctcccaaa 48879652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 40578890 - 40578931
Alignment:
Q  104 aacctctaggaattagagagcctagtctctcccaaaccaacc 145  Q
    |||| |||||||||||||||| ||||||||||||| ||||||    
T  40578890 aaccactaggaattagagagcttagtctctcccaacccaacc 40578931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 40868928 - 40868891
Alignment:
Q  106 cctctaggaattagagagcctagtctctcccaaaccaa 143  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  40868928 cctctaggaattagagagcctattctctctcaaaccaa 40868891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 45019069 - 45019097
Alignment:
Q  110 taggaattagagagcctagtctctcccaa 138  Q
    |||||||||||||||||||||||||||||    
T  45019069 taggaattagagagcctagtctctcccaa 45019097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 25184889 - 25184629
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatataagaaagtaactgcagaaaagta-ccaacctcta 111  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  25184889 gataaatctatggtatttgggagattattgcataataataagcgaatgatgttttattattgatataggaaagtaactgcagaaaagtaaccaacctcta 25184790  T
Q  112 ggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctacatctttatttataatagtaactcactat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  25184789 ggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctgcatctttatttataatactaactccctat 25184690  T
Q  212 aacagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaata 278  Q
    | |||||||||||||||||| |||||| || ||||||||      ||||||||||||||||||||||    
T  25184689 agcagttacatagaagttcttcagatagcagttactatg------taactaattaatatattaaata 25184629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 35390629 - 35390487
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatg------atctattattattgatataagaaagtaactgcagaaaagta-ccaa 105  Q
    |||||||||||||||||||| ||||||||| | |||||||| | ||||      || |||||||||||||| | | ||||||||||||||| ||| ||||    
T  35390629 gataattctatggtatttggtagattattgtaaaataataaggaaatgcatgtgatgtattattattgatacatgtaagtaactgcagaaaggtaaccaa 35390530  T
Q  106 cctctaggaattagagagcctagtctctcccaaaccaacccac 148  Q
    ||| ||||| |||||||||||||||||||||||||||||||||    
T  35390529 cctttaggagttagagagcctagtctctcccaaaccaacccac 35390487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 35389290 - 35389201
Alignment:
Q  189 tatttataatagtaactcactataacagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaata 278  Q
    |||||||| |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||    
T  35389290 tatttatagtagtaactcactgtagcagttacatagaagttctgcagataacagttactatgtaacaattactaattgatatattaaata 35389201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 55380341 - 55380415
Alignment:
Q  104 aacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcc 178  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||| ||||||    
T  55380341 aacctctaggaattagagagcctagtctctcccaaaccaaccaacatataaaataactaatgccctcctttttcc 55380415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 35389746 - 35389691
Alignment:
Q  141 caacccacatacaaaatacccaatgccctcccttttcctctacatctttatttata 196  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  35389746 caacccacatacaaaatatccaatgcccacccttttcctctacatctttatttata 35389691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 51273771 - 51273719
Alignment:
Q  188 ttatttataatagtaactcactataacagttacatagaagttctgcagataac 240  Q
    |||||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  51273771 ttatttataatactaactccctatagcagttacatagaagttctgcagataac 51273719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 42428467 - 42428432
Alignment:
Q  103 caacctctaggaattagagagcctagtctctcccaa 138  Q
    ||||||||||||||||||||||||||||||||||||    
T  42428467 caacctctaggaattagagagcctagtctctcccaa 42428432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 9678781 - 9678749
Alignment:
Q  106 cctctaggaattagagagcctagtctctcccaa 138  Q
    ||||||||||| |||||||||||||||||||||    
T  9678781 cctctaggaatcagagagcctagtctctcccaa 9678749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 17165885 - 17166139
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgat---ataagaaagtaactgcagaaaagta-ccaacct 108  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||   | | ||||||||||||||||||||| |||||||    
T  17165885 gataattctatggtatttgggagattattgcataataataagggaatgatatattattattgatcatacaggaaagtaactgcagaaaagtaaccaacct 17165984  T
Q  109 ctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttttcctctacatctttatttataatagtaactcac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||         
T  17165985 ctaggaattagagagcctagtctctcccaaaccaacccacatacaaactacccaatgccctcccttttcctctgcatctttatttataatactaa----- 17166079  T
Q  209 tataacagttacatagaagttctgcagataacaattactatgtaacagtaactaattaatatattaaata 278  Q
              |||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||    
T  17166080 ----------acatagaagttctgcaaatagcagttactatgtaacagttactaattaatatattaaata 17166139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 41483203 - 41483079
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatg------atctattattattgatataagaaagtaactgcagaaaagt-accaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||      || |||||||||| ||| | |||||||||||||||||||| ||| |    
T  41483203 gataattctatggtatttgggagattattgcataataataagggaatgcacgtgatgtattattattcatacaggaaagtaactgcagaaaagtaaccta 41483104  T
Q  106 cctctaggaattagagagcctagtc 130  Q
    |||||||||||||||||||||||||    
T  41483103 cctctaggaattagagagcctagtc 41483079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 29250530 - 29250494
Alignment:
Q  106 cctctaggaattagagagcctagtctctcccaaacca 142  Q
    ||||||||||| |||||||||||||||||||||||||    
T  29250530 cctctaggaatcagagagcctagtctctcccaaacca 29250494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 27021314 - 27021257
Alignment:
Q  189 tatttataatagtaactcactataacagttacatagaagttctgcagataacaattac 246  Q
    ||||||||||| |||||| | |||||||||  |||||| |||||||||||||| ||||    
T  27021314 tatttataatactaactcccaataacagttttatagaaattctgcagataacagttac 27021257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 10857321 - 10857394
Alignment:
Q  103 caacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccctttt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  10857321 caacctctaggaattagagagcctagtctctcccaaaccaaccaacatacaaaatactcaatgccctccctttt 10857394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 832122 - 832031
Alignment:
Q  81 gaaagtaactgcagaaaagtaccaa-cctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcc 171  Q
    ||||||||||||| |||| || ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||    
T  832122 gaaagtaactgcataaaactaacaaacctctaggaattatagagcctagtctctcccaaaccaaccaacatacaaaatactcattgccctcc 832031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 832248 - 832201
Alignment:
Q  13 gataattctatggtatttgggagattattgcataataataaaggaatg 60  Q
    |||||||||||| |||||||| |||||||| |||||||||| ||||||    
T  832248 gataattctatgatatttgggggattattggataataataagggaatg 832201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 23112524 - 23112484
Alignment:
Q  103 caacctctaggaattagagagcctagtctctcccaaaccaa 143  Q
    |||||||||||| |||||||||||||  |||||||||||||    
T  23112524 caacctctaggacttagagagcctagaatctcccaaaccaa 23112484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 23117322 - 23117282
Alignment:
Q  103 caacctctaggaattagagagcctagtctctcccaaaccaa 143  Q
    |||||||||||| |||||||||||||  |||||||||||||    
T  23117322 caacctctaggacttagagagcctagaatctcccaaaccaa 23117282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 6242 - 6206
Alignment:
Q  106 cctctaggaattagagagcctagtctctcccaaacca 142  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6242 cctctaggaatcagagagcctagtctctcccaaacca 6206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 6572 - 6536
Alignment:
Q  106 cctctaggaattagagagcctagtctctcccaaacca 142  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6572 cctctaggaatcagagagcctagtctctcccaaacca 6536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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