View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20497_low_24 (Length: 289)
Name: NF20497_low_24
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 122 - 279
Target Start/End: Original strand, 9439510 - 9439667
Alignment:
| Q |
122 |
gagggaattcgcaaaaattataagaagaaagtgggagagtggaagaggatctatcctaatggatttaaggatagaaaatgttgtatctgactctgcagag |
221 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439510 |
gagggaattcgcaagaattatatgaagaaagtgggagagtggaagaggatctatcctaatggatttaaggatagaaaatgttgtatctgactctgcagag |
9439609 |
T |
|
| Q |
222 |
taacctctggttttcttctacctttttcttactatccaaatactttctcactcctatg |
279 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
9439610 |
taacctctggttttcttctaccttttgcttactatccaaatactttgtcactcctatg |
9439667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 9439449 - 9439512
Alignment:
| Q |
20 |
tatacaatgagaatttgatgaaggttcgcctgaaaagaattttagaccagatattccctcggag |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439449 |
tatacaatgagaatttgatgaaggttcgcctgaaaagaattttagaccagatattccctcggag |
9439512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University