View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_25 (Length: 269)
Name: NF20497_low_25
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 3144240 - 3144480
Alignment:
| Q |
18 |
gattaagttggcagagaaagtgtgtttggctcagaatagagaatagaaagaaagaaacagcagagaccacagagtacagacctctctcattcactctttt |
117 |
Q |
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| T |
3144240 |
gattaagttggcagagaaagtgtgtttggctcagaatagagaatagaaagaaagaaacagcagagaccacagagtacagacctctctcattcactctttt |
3144339 |
T |
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| Q |
118 |
gagatttgcgccccaaccataatcttaactcatcttggacttggttttaagcaaataaggcggcgaccattactctctcttcttcactttctctattatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3144340 |
gagatttgcgccccaaccataatcttaactcatcttggacttagttttaagcaaataaggcggcgaccattactctctcttcttcactttctctattatt |
3144439 |
T |
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| Q |
218 |
tctgacttcattcaccaactaacattattaactgcattcat |
258 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |
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| T |
3144440 |
tctgacttcattcaccaacttacattattaactgcattcat |
3144480 |
T |
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