View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20497_low_3 (Length: 692)

Name: NF20497_low_3
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20497_low_3
NF20497_low_3
[»] chr8 (23 HSPs)
chr8 (17-586)||(25488978-25489547)
chr8 (17-322)||(25385100-25385413)
chr8 (424-586)||(25646202-25646369)
chr8 (424-551)||(24913783-24913915)
chr8 (127-353)||(25603162-25603397)
chr8 (459-586)||(25603826-25603951)
chr8 (487-586)||(25799544-25799640)
chr8 (20-99)||(25799396-25799475)
chr8 (524-586)||(25694637-25694699)
chr8 (20-101)||(25603021-25603102)
chr8 (141-223)||(25799465-25799547)
chr8 (629-682)||(25489590-25489643)
chr8 (206-266)||(25321366-25321426)
chr8 (513-586)||(25321934-25322004)
chr8 (629-682)||(25694742-25694795)
chr8 (437-526)||(25569119-25569208)
chr8 (629-682)||(25646412-25646465)
chr8 (629-677)||(24913658-24913706)
chr8 (629-682)||(25322047-25322098)
chr8 (629-682)||(25604000-25604053)
chr8 (453-501)||(25321889-25321937)
chr8 (645-682)||(25799658-25799695)
chr8 (397-425)||(25385414-25385442)
[»] scaffold0070 (6 HSPs)
scaffold0070 (424-551)||(17826-17951)
scaffold0070 (20-109)||(18540-18629)
scaffold0070 (20-99)||(38146-38225)
scaffold0070 (184-266)||(18458-18539)
scaffold0070 (629-674)||(17704-17749)
scaffold0070 (397-425)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (427-472)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (427-472)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 17 - 586
Target Start/End: Original strand, 25488978 - 25489547
Alignment:
Q  17 caagctactcatatgaggaattgtttaatgcaaaactcagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttacct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25488978 caagctactcatatgaggaattgtttaatgcaaaactcagttttcttataaccaagaatcaaaataaatcctttgtctcatcttactatagttcttacct 25489077  T
Q  117 cttaaatagtaacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489078 cttaaatagtaacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatc 25489177  T
Q  217 gtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489178 gtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatg 25489277  T
Q  317 atatatcatcaaagagtttaattactggaagcaattgnnnnnnnnnaaacatcttttttgcttgttgatttcgggcaaacaatatatttttgtacttttg 416  Q
    ||||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25489278 atatatcatcaaatagtttaattactggaagcaattgtttttttttaaacatcttttttgcttgttgatttcgtgcaaacaatatatttttgtacttttg 25489377  T
Q  417 acacaagattatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaataga 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25489378 acacaagattatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagaaagttcagtaataga 25489477  T
Q  517 agatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489478 agatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25489547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 25385100 - 25385413
Alignment:
Q  17 caagctactcatatgaggaattgtttaatgcaaaactcagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttac-- 114  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  25385100 caagctactcaaatgaggaattgtttaatgcaaaactcagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttatat 25385199  T
Q  115 -----ctcttaaatagtaacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaac 209  Q
         ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||| | ||||    
T  25385200 attatctcttaaatagaaacttatactgttcttgtctcatcaaacagattttaagataaattcttagccaaaactgtaaaatcagtaattatgcaaaaac 25385299  T
Q  210 tagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaaga--tgtcaagagacaaaagcagcaacaa 307  Q
     |||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |  | ||| |||||||| ||||||||||    
T  25385300 cagaatcatccaaaggtgaatggaccaccatgcatttgaaatttagtttttctttgtgaatttttgtaaaaaaaatttca-gagacaaaggcagcaacaa 25385398  T
Q  308 ctattcatgatatat 322  Q
    | || ||||||||||    
T  25385399 caatgcatgatatat 25385413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 424 - 586
Target Start/End: Original strand, 25646202 - 25646369
Alignment:
Q  424 attatgtagcaacctagtaagtaga-----caccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaag 518  Q
    |||||||||||||||||||||||||     ||||||||| ||| |||||||||||||||||||||||  ||||||||||||||  |||||||||||||||    
T  25646202 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaactaaaaactgattagaaggttcagtaatagaag 25646301  T
Q  519 atcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 586  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25646302 atcttttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25646369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 424 - 551
Target Start/End: Complemental strand, 24913915 - 24913783
Alignment:
Q  424 attatgtagcaacctagtaagtagac-----accacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaag 518  Q
    ||||||||||||||||||||||||||     |||||||| ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  24913915 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaaccaaaaactgattagaaagttcagtaatagaag 24913816  T
Q  519 atcttttcttcctattcttacacaatgagtcaa 551  Q
    |||||||||||| ||||||||||||||||||||    
T  24913815 atcttttcttcccattcttacacaatgagtcaa 24913783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 127 - 353
Target Start/End: Original strand, 25603162 - 25603397
Alignment:
Q  127 aacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtccaaaggt 226  Q
    |||||||||  ||||||| |||||||||  |||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||| |||||| |||    
T  25603162 aacttatacaattcttgtttcatcaaaccaattttaagatgaattctcaaccaaaactgaaaaacctgcaattatgcagaaactagaatagtccaatggt 25603261  T
Q  227 gaatggaccaacatgcatttgaaatttact----------ttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatg 316  Q
    ||||||||||| |||||||  ||||||| |           |||||| | ||||||||||||| ||||||  |||||||| || | |||||| || ||||    
T  25603262 gaatggaccaatatgcattacaaatttagtgaatttggacatttattagcgaatttttgtaaacgatgtc-ggagacaaaggccggaacaacaatgcatg 25603360  T
Q  317 atatatcatcaaagagtttaattactggaagcaattg 353  Q
    ||||||||||  |||||||||||||| |||| |||||    
T  25603361 atatatcatcttagagtttaattactagaagaaattg 25603397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 459 - 586
Target Start/End: Original strand, 25603826 - 25603951
Alignment:
Q  459 tatgacataaaagacagaaatattcaatcaaaa-actgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagaccct 557  Q
    ||||||| ||||| ||||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  25603826 tatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatataagatcttttcttcccattcgtacacaatgagtcaagaccct 25603925  T
Q  558 tactactattctcctccaaagactgcacc 586  Q
     |||||   ||||||||||||||||||||    
T  25603926 cactac---tctcctccaaagactgcacc 25603951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 487 - 586
Target Start/End: Original strand, 25799544 - 25799640
Alignment:
Q  487 caaaaactgattagacagttcagtaatagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 586  Q
    ||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||   ||||||||||||||||||||    
T  25799544 caaaaactgattacaaagttcagtaatagaagatcttttcttcccattcttacacaatgattcaagaccctcactac---tctcctccaaagactgcacc 25799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 25799396 - 25799475
Alignment:
Q  20 gctactcatatgaggaattgtttaatgcaaaactcagttttcttataaccaagaataaaaataaatcctttgtctcatct 99  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  25799396 gctactcatatgatgaattgtttaatacaaaagtcagttttcttataaccatgaataaaaataaatcctttgtctcatct 25799475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 524 - 586
Target Start/End: Original strand, 25694637 - 25694699
Alignment:
Q  524 ttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 586  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25694637 ttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25694699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 25603021 - 25603102
Alignment:
Q  20 gctactcatatgaggaattgtttaatgcaaaactcagttttcttataaccaagaataaaaataaatcctttgtctcatctta 101  Q
    ||||||||||||||||||||||||||||||||  |||| |||||  ||||||||||||||||||||||||| ||||||||||    
T  25603021 gctactcatatgaggaattgtttaatgcaaaagccagtattcttgcaaccaagaataaaaataaatcctttctctcatctta 25603102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 25799465 - 25799547
Alignment:
Q  141 ttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtccaaa 223  Q
    |||||||||| ||| |||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||    
T  25799465 ttgtctcatctaactgattttaagatacattctcagcaaaaactgaaaaatcagcaattatgcagaaactagaatcatccaaa 25799547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 629 - 682
Target Start/End: Original strand, 25489590 - 25489643
Alignment:
Q  629 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489590 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 25489643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 25321366 - 25321426
Alignment:
Q  206 aaactagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgt 266  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25321366 aaactagaatcatccaaaggtgaatggaccaacatgcatttgaaatttagtttttatttgt 25321426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 513 - 586
Target Start/End: Original strand, 25321934 - 25322004
Alignment:
Q  513 tagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 586  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  25321934 tagaagatcttttcttcccattcttacacaatgagtcaagaccctcactac---tctcctccaaagactgcacc 25322004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 629 - 682
Target Start/End: Original strand, 25694742 - 25694795
Alignment:
Q  629 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 682  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25694742 gagaggggatacaacataaatggatacagtacacacgatttacatgcttctgtg 25694795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 526
Target Start/End: Original strand, 25569119 - 25569208
Alignment:
Q  437 ctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatcttttc 526  Q
    ||||||| ||||||||||||| ||||||| | |||| | |||||| |||  ||||| |||||||  ||||||||||||||||||||||||    
T  25569119 ctagtaactagacaccacctggtatgacagagaagaaataaatatgcaacaaaaaaatgattagcaagttcagtaatagaagatcttttc 25569208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 682
Target Start/End: Original strand, 25646412 - 25646465
Alignment:
Q  629 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 682  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||| ||||    
T  25646412 gagaggggatacaacataaatggatatagtacacacgatttacatgcttttgtg 25646465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 629 - 677
Target Start/End: Complemental strand, 24913706 - 24913658
Alignment:
Q  629 gagaggggatacaacataaatggatacaatacacacgatttacatgctt 677  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  24913706 gagaggggatacaacataaatggatagagtacacacgatttacatgctt 24913658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 682
Target Start/End: Original strand, 25322047 - 25322098
Alignment:
Q  629 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 682  Q
    ||||||||||||||  |||||||||||| ||||||| |||||||||||||||||    
T  25322047 gagaggggatacaa--taaatggatacagtacacacaatttacatgcttctgtg 25322098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 682
Target Start/End: Original strand, 25604000 - 25604053
Alignment:
Q  629 gagaggggatacaacataaatggatacaatacacacgatttacatgcttctgtg 682  Q
    ||||||| |||||| ||| ||||||| | |||||||||||||||||||||||||    
T  25604000 gagagggtatacaatatatatggatatagtacacacgatttacatgcttctgtg 25604053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 501
Target Start/End: Original strand, 25321889 - 25321937
Alignment:
Q  453 acctgatatgacataaaagacagaaatattcaatcaaaaactgattaga 501  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||||||||    
T  25321889 acctgctatgacataaaaggcagatatattcaaccaaaaactgattaga 25321937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 645 - 682
Target Start/End: Original strand, 25799658 - 25799695
Alignment:
Q  645 taaatggatacaatacacacgatttacatgcttctgtg 682  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  25799658 taaatggatacagtacacaccatttacatgcttctgtg 25799695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 397 - 425
Target Start/End: Original strand, 25385414 - 25385442
Alignment:
Q  397 aatatatttttgtacttttgacacaagat 425  Q
    |||||||||||||||||||||||||||||    
T  25385414 aatatatttttgtacttttgacacaagat 25385442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 85; Significance: 4e-40; HSPs: 6)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 424 - 551
Target Start/End: Complemental strand, 17951 - 17826
Alignment:
Q  424 attatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagacagttcagtaatagaagatctt 523  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| | || ||||||||||||||| ||||||||||||||  |||||    
T  17951 attatgtagcaacctagtaagtagacaccacctgctataacataaaagacaaaaataattaaccaaaaactgattagaaagttcagtaataga--atctt 17854  T
Q  524 ttcttcctattcttacacaatgagtcaa 551  Q
    ||||||| ||||||||||||||||||||    
T  17853 ttcttcccattcttacacaatgagtcaa 17826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 18629 - 18540
Alignment:
Q  20 gctactcatatgaggaattgtttaatgcaaaactcagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagtt 109  Q
    ||||||||||||| ||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18629 gctactcatatgaagaattgtgtaatgcaaaagccagttttcttataaccatgaataaaaataaatcctttgtctcatcttactatagtt 18540  T

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Target: scaffold0070; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 38225 - 38146
Alignment:
Q  20 gctactcatatgaggaattgtttaatgcaaaactcagttttcttataaccaagaataaaaataaatcctttgtctcatct 99  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  38225 gctactcatatgatgaattgtttaatgcaaaagtcagttttcttataaccatgaataaaaataaatcctttgtctcatct 38146  T

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Target: scaffold0070; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 18539 - 18458
Alignment:
Q  184 tgaaaaaccagcaattatgtagaaactagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgt 266  Q
    ||||||| ||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  18539 tgaaaaatcagcaattatgca-aaactaaaatcatccaaaggtgaatggaccaacatgcatttgaaatttagtttttctttgt 18458  T

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Target: scaffold0070; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 674
Target Start/End: Complemental strand, 17749 - 17704
Alignment:
Q  629 gagaggggatacaacataaatggatacaatacacacgatttacatg 674  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  17749 gagaggggatacaacataaatggatacagtacacacgatttacatg 17704  T

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Target: scaffold0070; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 397 - 425
Target Start/End: Complemental strand, 18389 - 18361
Alignment:
Q  397 aatatatttttgtacttttgacacaagat 425  Q
    |||||||||||||||||||||||||||||    
T  18389 aatatatttttgtacttttgacacaagat 18361  T

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Target: scaffold0526 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 11191 - 11146
Alignment:
Q  427 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 472  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11191 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11146  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 11971279 - 11971234
Alignment:
Q  427 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 472  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11971279 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11971234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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