View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20497_low_31 (Length: 238)
Name: NF20497_low_31
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 41841875 - 41841660
Alignment:
| Q |
1 |
gcattgctgtaactgtatatgtatcatacatatatatgcataacattttgtaggatttcagggaaagttggttttagtttatgctaactgtatatgtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41841875 |
gcattgctgtaactgtatatgtatcatacatacatatacataacattttgtaggatttcagggaaagttgattttagtttatgctaactgtatatgtatt |
41841776 |
T |
|
| Q |
101 |
gccgtctacatgcacgctttttagcctatgttctttggagtaattacaagttaattttactagtatatgtgtttttgggtgaaactgatgtcaaatgatt |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41841775 |
gccgtctacatgcacactttttagcctatgttctttggagtaattacatgttaattttactagtatatgtgtttttgggtgaaactgatgtcaaatgatt |
41841676 |
T |
|
| Q |
201 |
ttgatatacacatcgt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41841675 |
ttgatatacacatcgt |
41841660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 41841549 - 41841508
Alignment:
| Q |
62 |
ggaaagttggttttagtttatgctaactgtatatgtattgcc |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41841549 |
ggaaagttgattttagtttatgctaactgtatatgtattgcc |
41841508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 3461833 - 3461749
Alignment:
| Q |
81 |
atgctaactgtatatgtattgccgtctacatgcacgctttttagcctatgttctttggagtaattacaagttaattttactagta |
165 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
3461833 |
atgcaaactgtatatgtattgctgtctacatacacactttttagcctatgttctttggagtaattacatgataattttactagta |
3461749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University