View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_33 (Length: 236)
Name: NF20497_low_33
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_33 |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31044762 - 31044541
Alignment:
| Q |
1 |
aaatgaaaattggtttgtccatgtagatcatgaatggttaaatatctttcattcttattagttttattgacatttttactttgatttttaaagataatga |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
31044762 |
aaatgaaaattggtttgtccatgtagataatgaatggttaaatatctttcattcttattagttttaatgacatttttacttcgatttttaaagataatga |
31044663 |
T |
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| Q |
101 |
atagttagtnnnnnnnnttcaattagacatgttttctttatgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgttgaa |
200 |
Q |
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||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31044662 |
atagttagtaaaaaaaaatcaattagaccttttttctttatgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgttgaa |
31044563 |
T |
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| Q |
201 |
atgctgtgcccgtgttgaattt |
222 |
Q |
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|||||| |||||||||||||| |
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| T |
31044562 |
atgctgcacccgtgttgaattt |
31044541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 31044547 - 31044486
Alignment:
| Q |
141 |
tgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgttgaaat |
202 |
Q |
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| T |
31044547 |
tgaattttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaat |
31044486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 18644 - 18862
Alignment:
| Q |
12 |
ggtttgtccatgtagatcatgaatggttaaatatctttcattcttattagttttattgacatttttactttgatttttaaagataatgaatagttagtnn |
111 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
18644 |
ggtttgtctgtgtagataatgaatggttaaatatctttcattctttgtagttttattgacatttttgcttcgatttttaaagataatgaatagttagtta |
18743 |
T |
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| Q |
112 |
nnnnnnttcaattagac----------atgttttctttatgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgttgaaa |
201 |
Q |
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||||||||||| | |||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||| |
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| T |
18744 |
aaaaaattcaattagaccttctttttttttttttttttatgaattttggcattttatgaa--gtagagtcaaaaggattaactagataacatcattgaaa |
18841 |
T |
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| Q |
202 |
tgctgtgcccgtgttgaattt |
222 |
Q |
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||||| | |||| |||||||| |
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| T |
18842 |
tgctgcgtccgtattgaattt |
18862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 18856 - 18917
Alignment:
| Q |
141 |
tgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgttgaaat |
202 |
Q |
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||||||||||||| |||||||| |||||||||| |||||||||| ||||||||| ||||||| |
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| T |
18856 |
tgaattttggcatattatgaataggagagtcaaaaggattaactggataacatcattgaaat |
18917 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 172772 - 172952
Alignment:
| Q |
16 |
tgtccatgtagatcatgaatggttaaatatctttcattcttattagttttattgacatttttactttgatttttaaagataatgaatagttagtnnnnnn |
115 |
Q |
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||||||| ||||||||||||| |||||||| ||||||||| ||| |||||||||||||||| || ||||||||||||||||| ||| ||| |
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| T |
172772 |
tgtccatatagatcatgaatgattaaatattcttcattctttttaattttattgacatttttgtttcgatttttaaagataatggata-tta----aaca |
172866 |
T |
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| Q |
116 |
nnttcaattagacatgttttctttatgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgttgaaat |
202 |
Q |
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|||| |||||| |||| |||||| |||||||||| ||||| |||||||||||| ||||||||||||||||| || ||||||| |
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| T |
172867 |
atttcagttagac-ccttttttttatggattttggcatattatgtgttggagagtcaaaaggattaactagataacctcattgaaat |
172952 |
T |
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