View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20497_low_34 (Length: 234)
Name: NF20497_low_34
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44680779 - 44680999
Alignment:
| Q |
1 |
caacaatttgcttttgagatcatatgctgaattgaaaaactcagctcatagagtcgctgtgctgcttgcaagattttgagaagattgttgataaatgtgt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44680779 |
caacaatttgcttttgagatcatgtgctgaattgaaaaactcagctcatagagtcactgtgctgcttgcaagattttgagaagattgttgataaatgtgt |
44680878 |
T |
|
| Q |
101 |
tttggcaccttatttctctctcactgaacttgccaagtttaccatttctaagagtctttggttctagcaggatcatcaagttcttacgggtagtaattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44680879 |
tttggcaccttatttctctctcactgaacttgccaagtttaccatttctaagagtctttggttctagcaggatcatcaagttcttacgggtagtaattat |
44680978 |
T |
|
| Q |
201 |
aggaccaaggctagcaataat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44680979 |
aggaccaaggctagcaataat |
44680999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 44691571 - 44691755
Alignment:
| Q |
37 |
aaactcagctcatagagtcgctgtgctgcttgcaagattttgagaagattgttg---ataaatgtgttttggcaccttatttctctctcactgaacttgc |
133 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
44691571 |
aaactcagctcagagagtcgttgtgatgcttgcaagattttgagaagattggtggtgataaatgtgttttggcaccttatttctcactcactgaacccac |
44691670 |
T |
|
| Q |
134 |
caagtttaccatttctaagagtctttggttctagcaggatcatcaagttcttacgggtagtaattataggaccaaggctagcaat |
218 |
Q |
| |
|
||||||||| ||||| ||||||||||||| ||| ||| |||||||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
44691671 |
caagtttactatttccaagagtctttggtactaacagaatcatcaagttcatacgtgtggtaattataggaccaaggctagcaat |
44691755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 13171617 - 13171768
Alignment:
| Q |
15 |
tgagatcatatgctgaattgaaaaactcagctcatagagtcgctgtgctgcttgcaagattttgagaagattgttgataaatgtgttttggcaccttatt |
114 |
Q |
| |
|
||||| ||| |||||| |||||||| |||||| | |||||| | |||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
13171617 |
tgagaccatgtgctgagttgaaaaaatcagcttagagagtcattctgctgcttgcaatattttgagaagattggtgatgaatgtgttttgacaccttatt |
13171716 |
T |
|
| Q |
115 |
tctctctcactgaacttgccaagtttaccatttctaagagtctttggttcta |
166 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13171717 |
tctctcccactgaacctgccaagtttaccatttctgggagtctttggttcta |
13171768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 41983496 - 41983300
Alignment:
| Q |
25 |
tgctgaattgaaaaactcagctcatagagtcgctgtgctgcttgcaagattttgagaagattgttgataaatgtgttttggcaccttatttctctctcac |
124 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41983496 |
tgctgagttgaaaaactcagctcagagagtcattgtgcttcttgcaatattttgagaagattgctgataaatgtgttttggcaccttatttctcttccac |
41983397 |
T |
|
| Q |
125 |
tgaacttgccaagtttaccatttctaagagtctttggttctag---caggatcatcaagttcttacgggtagtaattataggaccaaggctagcaat |
218 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||| |||||| || |||||||||||||| |||||||||| ||||||||| |||| |||| |
|
|
| T |
41983396 |
tgaacctgccaagtttaccatttctgagagtctttgattctagcatcatcatcatcaagttcttgtaggtagtaattttaggaccaaagctatcaat |
41983300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 22428152 - 22428009
Alignment:
| Q |
58 |
tgtgctgcttgcaagattttgag---aagat----tgttgataaatgtgttttggcaccttatttctctctcactgaacttgccaagtttaccatt--tc |
148 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||| || |
|
|
| T |
22428152 |
tgtgctgcttgcaagattttgaggagaagatgtgctgctgataaatgtgttttggcaccttattttcctcctactgaccctgccaagtttaccattgctc |
22428053 |
T |
|
| Q |
149 |
taagagtctttggttctagcaggatcatcaagttcttacgggta |
192 |
Q |
| |
|
||||| |||||| |||||| |||||||| ||||||| |||| |
|
|
| T |
22428052 |
atagagtttttggtgctagcaacatcatcaaattcttacaggta |
22428009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 194
Target Start/End: Original strand, 39790294 - 39790436
Alignment:
| Q |
58 |
tgtgctgcttgcaagattttgagaagat----tgttgataaatgtgttttggcaccttatttctctctcactgaacttgccaagtttaccatttctaa-- |
151 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||| |||||||||||||||||||||||| ||| ||| |||| | |||| ||||||| | || | |
|
|
| T |
39790294 |
tgtgctgcttgcaagattttaagaagaagatgtgctgagaaatgtgttttggcaccttatttccctcccacggaaccttccaaatttaccactgctcacc |
39790393 |
T |
|
| Q |
152 |
gagtctttggttctagcaggatcatcaagttcttacgggtagt |
194 |
Q |
| |
|
| || |||||| |||||| |||||||||||||||| |||||| |
|
|
| T |
39790394 |
gtgtatttggtgctagcaacatcatcaagttcttacaggtagt |
39790436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University