View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20497_low_37 (Length: 208)
Name: NF20497_low_37
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_37 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 34788608 - 34788782
Alignment:
| Q |
1 |
ttgtcggtttgtttatttatcatttagtgattttgcattttctagtggtatttattattttctgcgtgtatcttaggattaattatgcactttatgaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34788608 |
ttgtcggtttgtttatttatcatttagtgatttttcattttctagtggtatttattattttctgcgtgtatcttaggattaattatgcactttatgaaga |
34788707 |
T |
|
| Q |
101 |
acttgatgctggagatatggagcgaacaagagatgtgtacaagtaagcagccttttgtgaacttctaagtatttt |
175 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34788708 |
acttgatgctggagatatggagcaaacaagagatgtgtacaagtaagcagccttttgtgaacttctaagtatttt |
34788782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 2292580 - 2292421
Alignment:
| Q |
7 |
gtttgtttatttatcatttagtgattttgcattttctagtggtatttattattt-tctgcgtgtatcttaggattaattatgcactttatgaagaacttg |
105 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| | |||||||||||||||| |||| || || |||||||||||||||||||| ||||||||||| | |
|
|
| T |
2292580 |
gtttgtttatttattatttattgattttgcatttttttgtggtatttattatttgtctgtgtataacttaggattaattatgcactctatgaagaactcg |
2292481 |
T |
|
| Q |
106 |
atgctggagatatggagcgaacaagagatgtgtacaagtaagcagccttttgtgaacttc |
165 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2292480 |
atgctggagacatggagcgaacaagagacgtgtacaagtaagcagccttttgtgaacttc |
2292421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 2597732 - 2597576
Alignment:
| Q |
7 |
gtttgtttatttatcatttagtgattttgcattttctagtggtatttattattt-tctgcgtgtatcttaggattaattatgcactttatgaagaacttg |
105 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||| || ||||| ||| |||||| |||||||||||||||||||||| |
|
|
| T |
2597732 |
gtttgtttatttattatttagtgattttgcattttcttgtggtatttattatttgtccatgtgtaactttggattagttatgcactttatgaagaactta |
2597633 |
T |
|
| Q |
106 |
atgctggagatatggagcgaacaagagatgtgtacaagtaagcagccttttgtgaac |
162 |
Q |
| |
|
||| ||||||||| |||||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
2597632 |
atgttggagatattgagcgaacaagagacgtgtacaggtaagcagccttttctgaac |
2597576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 49279942 - 49279879
Alignment:
| Q |
78 |
attaattatgcactttatgaagaacttgatgctggagatatggagcgaacaagagatgtgtaca |
141 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49279942 |
attaagtatgcactctatgaagagcttgatgctggagatatggagcgagcaagagatgtgtaca |
49279879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 49276386 - 49276322
Alignment:
| Q |
77 |
gattaattatgcactttatgaagaacttgatgctggagatatggagcgaacaagagatgtgtaca |
141 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| || || ||||||||||| ||||||||||||||| |
|
|
| T |
49276386 |
gattaattatgcacgttatgaagagtttgatactagaaatatggagcgagcaagagatgtgtaca |
49276322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University