View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20497_low_38 (Length: 207)

Name: NF20497_low_38
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20497_low_38
NF20497_low_38
[»] chr5 (23 HSPs)
chr5 (97-195)||(2485055-2485154)
chr5 (1-95)||(2740274-2740368)
chr5 (1-95)||(28177775-28177869)
chr5 (1-92)||(18520890-18520981)
chr5 (1-95)||(14831814-14831908)
chr5 (1-95)||(33825330-33825424)
chr5 (1-95)||(42414308-42414402)
chr5 (26-95)||(26720516-26720585)
chr5 (26-95)||(26990265-26990334)
chr5 (1-104)||(36732948-36733051)
chr5 (1-95)||(6679698-6679792)
chr5 (1-95)||(35785199-35785293)
chr5 (1-95)||(40145407-40145501)
chr5 (18-94)||(16327902-16327978)
chr5 (1-95)||(13811652-13811746)
chr5 (1-95)||(33149644-33149738)
chr5 (6-95)||(2252179-2252268)
chr5 (1-96)||(20073522-20073617)
chr5 (36-94)||(36875644-36875702)
chr5 (6-95)||(3921276-3921365)
chr5 (27-95)||(15409642-15409710)
chr5 (27-95)||(35943924-35943992)
chr5 (13-95)||(9603813-9603895)
[»] chr7 (25 HSPs)
chr7 (1-95)||(8080389-8080483)
chr7 (1-95)||(19329842-19329936)
chr7 (1-104)||(38837208-38837311)
chr7 (1-95)||(3434562-3434656)
chr7 (1-95)||(7389389-7389483)
chr7 (1-95)||(35137533-35137627)
chr7 (1-95)||(35468861-35468955)
chr7 (13-95)||(36361931-36362013)
chr7 (1-95)||(38267040-38267134)
chr7 (27-95)||(19436219-19436287)
chr7 (1-97)||(46374808-46374904)
chr7 (1-95)||(4999520-4999614)
chr7 (13-95)||(36362026-36362108)
chr7 (6-95)||(41915741-41915830)
chr7 (26-95)||(46033832-46033901)
chr7 (1-92)||(3783998-3784089)
chr7 (6-95)||(8238212-8238302)
chr7 (6-95)||(22343361-22343450)
chr7 (6-95)||(26296644-26296733)
chr7 (1-90)||(35522881-35522970)
chr7 (27-95)||(21234401-21234469)
chr7 (27-95)||(40957707-40957775)
chr7 (1-100)||(36208168-36208267)
chr7 (50-95)||(11044188-11044233)
chr7 (30-95)||(32564461-32564526)
[»] chr3 (27 HSPs)
chr3 (14-95)||(14623858-14623939)
chr3 (1-95)||(8956762-8956856)
chr3 (14-94)||(13898074-13898154)
chr3 (1-95)||(35536626-35536720)
chr3 (1-95)||(53982011-53982105)
chr3 (1-94)||(31456690-31456783)
chr3 (1-95)||(24699960-24700054)
chr3 (1-95)||(27714897-27714991)
chr3 (1-95)||(33644200-33644294)
chr3 (1-95)||(54868901-54868995)
chr3 (6-91)||(48587102-48587187)
chr3 (27-95)||(11095385-11095453)
chr3 (27-95)||(49607414-49607482)
chr3 (13-95)||(26141550-26141632)
chr3 (13-90)||(52629305-52629382)
chr3 (1-96)||(8076392-8076487)
chr3 (9-95)||(11347936-11348022)
chr3 (13-95)||(17470405-17470487)
chr3 (26-95)||(35965805-35965874)
chr3 (6-95)||(45058564-45058652)
chr3 (27-95)||(33118883-33118951)
chr3 (27-95)||(36707456-36707524)
chr3 (13-97)||(41080707-41080790)
chr3 (26-97)||(51419391-51419462)
chr3 (26-95)||(20764946-20765015)
chr3 (1-90)||(26754700-26754789)
chr3 (14-87)||(39670019-39670092)
[»] chr4 (21 HSPs)
chr4 (1-95)||(11511468-11511562)
chr4 (1-95)||(50052434-50052528)
chr4 (16-95)||(50526192-50526271)
chr4 (1-95)||(48183055-48183149)
chr4 (13-96)||(8343181-8343264)
chr4 (1-96)||(41236346-41236441)
chr4 (9-100)||(55475186-55475277)
chr4 (13-95)||(480465-480547)
chr4 (1-95)||(6034044-6034138)
chr4 (1-95)||(29234251-29234345)
chr4 (28-95)||(40574779-40574846)
chr4 (1-95)||(24995113-24995207)
chr4 (1-95)||(42044373-42044467)
chr4 (1-95)||(54473539-54473633)
chr4 (29-95)||(3481654-3481720)
chr4 (13-95)||(29239886-29239968)
chr4 (29-95)||(31910192-31910258)
chr4 (6-95)||(19670727-19670816)
chr4 (30-95)||(29547994-29548059)
chr4 (6-95)||(32766958-32767047)
chr4 (27-95)||(23608235-23608303)
[»] chr2 (26 HSPs)
chr2 (1-95)||(9058480-9058574)
chr2 (13-95)||(20700815-20700897)
chr2 (13-95)||(30915463-30915545)
chr2 (1-95)||(33436211-33436305)
chr2 (1-92)||(19930826-19930917)
chr2 (1-92)||(28863458-28863549)
chr2 (1-95)||(5574494-5574588)
chr2 (1-95)||(33436106-33436200)
chr2 (1-95)||(40613908-40614002)
chr2 (1-95)||(40701478-40701572)
chr2 (13-95)||(7465753-7465835)
chr2 (1-95)||(10249388-10249482)
chr2 (1-95)||(13438343-13438437)
chr2 (1-95)||(17473020-17473114)
chr2 (1-95)||(32505654-32505748)
chr2 (13-95)||(27864704-27864786)
chr2 (1-95)||(42257193-42257287)
chr2 (27-95)||(28381687-28381755)
chr2 (13-95)||(38882832-38882913)
chr2 (13-94)||(41575138-41575219)
chr2 (27-95)||(2533124-2533191)
chr2 (27-95)||(4060685-4060753)
chr2 (27-95)||(38273174-38273242)
chr2 (14-95)||(26891523-26891604)
chr2 (6-95)||(43490121-43490210)
chr2 (6-95)||(45097746-45097835)
[»] chr6 (16 HSPs)
chr6 (14-95)||(31953049-31953130)
chr6 (1-95)||(32869678-32869772)
chr6 (1-92)||(22880664-22880755)
chr6 (1-95)||(17598554-17598648)
chr6 (1-95)||(31976248-31976342)
chr6 (1-95)||(31110767-31110859)
chr6 (29-94)||(946377-946442)
chr6 (1-95)||(11427616-11427712)
chr6 (6-95)||(15508035-15508124)
chr6 (6-95)||(15990053-15990142)
chr6 (6-95)||(30341371-30341460)
chr6 (27-95)||(31109432-31109500)
chr6 (8-95)||(6209478-6209565)
chr6 (28-91)||(28536519-28536582)
chr6 (6-95)||(4231548-4231637)
chr6 (27-95)||(29857827-29857895)
[»] chr8 (21 HSPs)
chr8 (1-95)||(4854869-4854963)
chr8 (1-94)||(5957831-5957924)
chr8 (1-95)||(504127-504221)
chr8 (1-95)||(12831047-12831141)
chr8 (1-95)||(15197333-15197427)
chr8 (1-95)||(37038479-37038573)
chr8 (1-95)||(40423949-40424043)
chr8 (26-95)||(20074965-20075034)
chr8 (16-96)||(1179961-1180041)
chr8 (1-104)||(14547913-14548016)
chr8 (27-95)||(15048214-15048281)
chr8 (27-90)||(10621119-10621182)
chr8 (13-95)||(23122615-23122697)
chr8 (1-95)||(34012302-34012396)
chr8 (1-95)||(43414587-43414681)
chr8 (13-95)||(44507105-44507187)
chr8 (6-95)||(16383377-16383466)
chr8 (30-95)||(30479509-30479574)
chr8 (1-95)||(10284637-10284731)
chr8 (30-95)||(34307216-34307281)
chr8 (1-45)||(15258935-15258979)
[»] chr1 (23 HSPs)
chr1 (1-95)||(2581915-2582009)
chr1 (1-95)||(9474882-9474976)
chr1 (1-95)||(27564741-27564835)
chr1 (1-95)||(32813247-32813341)
chr1 (1-95)||(51898689-51898783)
chr1 (13-96)||(3000318-3000401)
chr1 (1-95)||(8346394-8346488)
chr1 (1-95)||(23597097-23597191)
chr1 (1-95)||(48716288-48716382)
chr1 (26-95)||(37649198-37649267)
chr1 (1-92)||(44548382-44548473)
chr1 (13-95)||(38595154-38595236)
chr1 (1-95)||(38632327-38632421)
chr1 (1-95)||(47452326-47452420)
chr1 (1-95)||(43132-43226)
chr1 (1-95)||(50630458-50630552)
chr1 (6-95)||(50591011-50591100)
chr1 (6-94)||(11152389-11152476)
chr1 (13-95)||(41608511-41608593)
chr1 (1-95)||(41758805-41758899)
chr1 (6-95)||(5959011-5959100)
chr1 (26-95)||(37926469-37926538)
chr1 (27-95)||(49811559-49811627)
[»] scaffold0321 (1 HSPs)
scaffold0321 (14-95)||(10128-10209)
[»] scaffold1268 (1 HSPs)
scaffold1268 (27-95)||(961-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (27-95)||(961-1029)
[»] scaffold0237 (1 HSPs)
scaffold0237 (27-95)||(4029-4097)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 2485055 - 2485154
Alignment:
Q  97 tatgaaaaggccaagattatgtttt-ctttaagggacaaatcaagattaatcatttacttcacatgcgaagagtattttagatacaagccaagttgtttg 195  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||    
T  2485055 tatgaacaggccaagattatgtttttctttaagggacaaatcaagattaatcagttactttacatgcgaagagtattttagatacaaaccaagttgtttg 2485154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2740368 - 2740274
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| |||||||||||||||||||||||    
T  2740368 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 2740274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 28177869 - 28177775
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||  ||| |||||||||||||||| ||| || |||||||||||||||||| ||| |||||||||||||||||| ||||    
T  28177869 tgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 18520890 - 18520981
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcatta 92  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| ||| ||||||||||||||||    
T  18520890 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 18520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 14831908 - 14831814
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  ||||||||||||||||||| || |||||||||||||||||| ||| ||  |||||||||||||||||||    
T  14831908 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33825330 - 33825424
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| ||||| | ||| |||||||||||||||||||||||||||| || ||||| | |||||||||| ||| || ||||||||| ||||||||||    
T  33825330 tgtgcttgtgtaaggttcacatgaacacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 42414308 - 42414402
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| ||||||||||||  ||||||||||||||| ||| || |||||||||||||||||| |||   | |||||||||||||||||||    
T  42414308 tgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 26720585 - 26720516
Alignment:
Q  26 cacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||||||| |||||| || ||||||||||||||| ||| |||||||||||||||||| ||||    
T  26720585 cacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 26990334 - 26990265
Alignment:
Q  26 cacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||||||| |||||| || ||||||||||||||| ||| |||||||||||||||||| ||||    
T  26990334 cacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36732948 - 36733051
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcgtatg 100  Q
    |||| |||||| |||||||| |||  | ||||||||||||| ||| || |||||||||||||||||  ||| ||| ||||||||||||||||||| | ||    
T  36732948 tgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactcttctg 36733047  T
Q  101 aaaa 104  Q
    ||||    
T  36733048 aaaa 36733051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 6679792 - 6679698
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||  ||| |||||||||||||||| ||| || |||||| ||||||||||| ||| | |||||||||||||||| ||||    
T  6679792 tgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactc 6679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 35785293 - 35785199
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||| || ||||| | |  ||||||||||||||| ||| || |||||| ||||||||||| ||| ||| |||||||||||||||||||    
T  35785293 tgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 40145501 - 40145407
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| |  || ||||||||||||||| ||| ||| |||||||||||||||||||    
T  40145501 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 16327978 - 16327902
Alignment:
Q  18 cacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattact 94  Q
    |||||||||||||||||||||||||||| || ||||| || ||||||||| ||| ||||| | ||| ||||||||||    
T  16327978 cacatgaacacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcattact 16327902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 13811746 - 13811652
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||| | ||||||||| ||| ||| |||||||||||| ||||||    
T  13811746 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactc 13811652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33149644 - 33149738
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  |||||||| |||||| ||| || ||||||||||||||| || ||| ||| |||||||||||||||||||    
T  33149644 tgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 2252179 - 2252268
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| ||| || ||||| |||||||||||| ||| ||||||| |||||||||| ||||    
T  2252179 ttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 20073522 - 20073617
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcg 96  Q
    |||| ||||||||||||||| ||  ||||||  ||||||||||||  | |||||||||||||||| |  || | ||||||||| ||||||||||||    
T  20073522 tgtgcttgtgcagggtccacgtggtcacgtgcaagatttttatgtgagtgtcaaagggtgtattgtcatctaatgatgtctatatatcattactcg 20073617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 36875644 - 36875702
Alignment:
Q  36 atttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattact 94  Q
    |||||| ||| || |||||||||||||||||| ||| ||| ||||||||||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 3921276 - 3921365
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| ||| || ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  3921276 ttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 15409642 - 15409710
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || |||||||  ||||||| | ||| |||||||||||||||||| ||||    
T  15409642 acgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 35943924 - 35943992
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || |||||| | ||||||||| ||| ||| |||||||||||||| ||||    
T  35943924 acgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 9603895 - 9603813
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||| |||| || ||||||||||||| |||||| || || | |||||||  | ||| ||||||| |||||||||||||||    
T  9603895 gggtccatatgaccatgtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcattactc 9603813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8080389 - 8080483
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  |||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  8080389 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 8080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 19329936 - 19329842
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||| ||||||||||| ||| |||||||||||||||||||||||    
T  19329936 tgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 38837311 - 38837208
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcgtatg 100  Q
    |||| |||||| |||||||| |||  ||||||||||||||| |||||| ||  |||||||||||||| ||| ||| ||||||||||||||||||| | ||    
T  38837311 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactcttttg 38837212  T
Q  101 aaaa 104  Q
    ||||    
T  38837211 aaaa 38837208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 3434656 - 3434562
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  ||||||||| ||||| ||| || |||||||||||||||||| ||| |||||||||||||||||||||||    
T  3434656 tgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 3434562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7389483 - 7389389
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || ||||||| |||||||||| ||| ||| |||||||||||||||||||    
T  7389483 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 7389389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 35137627 - 35137533
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  |||||| |||||||| ||| || |||||||||||||||||| ||| ||| ||||||| |||||||||||    
T  35137627 tgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35468861 - 35468955
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| ||||||||||||||||||  ||| | | |||||||||||| || |||||| | |||||||||  || |||||||||||||||||||||||    
T  35468861 tgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactc 35468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 36361931 - 36362013
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| ||| || |||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  36361931 gggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 36362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 38267134 - 38267040
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||| | | | ||| |||||||||||||||||||    
T  38267134 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 19436219 - 19436287
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || |||||| ||||||||| | ||| |||||||||||||||||||||||    
T  19436219 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactc 19436287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 46374808 - 46374904
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcgt 97  Q
    |||| |||||| |||||||  ||  |||||||||||||||| ||| || || ||||||||| ||||| ||| |||||||||||||||||| ||||||    
T  46374808 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactcgt 46374904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 4999520 - 4999614
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  |||| |||||||||| ||| || |||||| |||||||||||  || ||| |||||||||||||||||||    
T  4999520 tgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 36362108 - 36362026
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| ||| || |||||||| |||||| || ||| ||| |||||||||||||||||||    
T  36362108 gggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactc 36362026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 41915830 - 41915741
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| |||||| ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  41915830 ttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 41915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 46033832 - 46033901
Alignment:
Q  26 cacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||||||||||| || || ||||||||||||||| ||| || || |||||||||||| ||||    
T  46033832 cacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactc 46033901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3784089 - 3783998
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcatta 92  Q
    |||| |||||| || ||||| |||  ||||||||||||||| ||| || |||||| | ||||||||| ||| ||| ||||||||||||||||    
T  3784089 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 8238302 - 8238212
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccct-caggatgtctatgtatcattactc 95  Q
    |||||| ||||||| ||||  || |||||||||||| ||| || |||||||||||||||||| ||| |||| ||| |||||||||| ||||    
T  8238302 ttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 22343450 - 22343361
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| ||| || ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  22343450 ttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 22343361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 26296733 - 26296644
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||||| |||||||||||||| |  || ||||||| ||||| | ||| |||||||||||||||||| ||||    
T  26296733 ttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactc 26296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35522970 - 35522881
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcat 90  Q
    |||| |||||| || |||| |||  |||||||||||||||| ||| || || ||| ||||||||||| | | ||||||||||||||||||    
T  35522970 tgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 21234469 - 21234401
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||||| |||  | |||||||||||||||| | ||| |||||||||||||||||| ||||    
T  21234469 acgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 40957775 - 40957707
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| ||  |||||| |||||||||| ||| ||  |||||||||||||||||||    
T  40957775 acgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactc 40957707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 36208267 - 36208168
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcgtatg 100  Q
    |||| ||||||||||||||| ||| ||| |||||| ||||| ||| || ||||| |  |||||| || ||| ||| |||||||||||||| |||| ||||    
T  36208267 tgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactcttatg 36208168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 11044233 - 11044188
Alignment:
Q  50 gtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  11044233 gtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 11044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 32564461 - 32564526
Alignment:
Q  30 tgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||| ||| || ||||| |||||||||||| ||| || |||| |||||||||| ||||    
T  32564461 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 14623858 - 14623939
Alignment:
Q  14 ggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| |||||||||||||||| || ||||| |||||||||||| ||| |||||||||||||||||||||||    
T  14623858 ggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8956856 - 8956762
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| ||||| | ||||||||||||||||||||| |||||||||| || |||||||| ||||||||| | | |||||||||||||||||||||||    
T  8956856 tgtgcttgtgtaaggtccacatgaacacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactc 8956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 13898074 - 13898154
Alignment:
Q  14 ggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattact 94  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||| ||||||| ||| ||||||||||    
T  13898074 ggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcattact 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 35536720 - 35536626
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| ||||| | ||||||||||| ||||||||| |||||||||| || |||||| ||||||||||| | | |||||||||||||||||||||||    
T  35536720 tgtgcttgtgtaaggtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactc 35536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 53982105 - 53982011
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  53982105 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 31456783 - 31456690
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattact 94  Q
    |||| |||||| ||||||||||||  ||||||||||||||| ||| || |||||||||||||||||| |||  || ||||||||||||||||||    
T  31456783 tgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcattact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 24699960 - 24700054
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||| |||||||||| ||  |||||| ||||||||||||| || |||||| |||||||||||  || |||||||||||||||||||||||    
T  24699960 tgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactc 24700054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27714897 - 27714991
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| ||||||||||||  ||||||||||||||| ||| || ||||||||||||||| || ||| | | |||||||||||||||||||    
T  27714897 tgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactc 27714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 33644294 - 33644200
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||  ||| |||||||||||||||||||    
T  33644294 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 54868901 - 54868995
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||| |||||||| | |  ||||||||||||||| ||| || |||||| ||||||||||| ||| ||| |||||||||||||||||||    
T  54868901 tgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 54868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 48587102 - 48587187
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcatt 91  Q
    |||||| || ||||| |||  |||||||||||||||||||||| |||||||||||||||||| ||| ||| | |||||||||||||    
T  48587102 ttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 11095385 - 11095453
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  11095385 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 49607482 - 49607414
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  49607482 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 26141550 - 26141632
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||  ||| |||||||||||||||| ||| || || ||||||||||||||| ||| |||||||||||||||||| ||||    
T  26141550 gggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 52629382 - 52629305
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcat 90  Q
    |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| ||| ||||||||||||||    
T  52629382 gggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 8076487 - 8076392
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcg 96  Q
    |||| |||||| |||||||| |||  |||||| |||||||| ||| || ||||||||||||| |||| ||| ||| ||| ||||||||||||||||    
T  8076487 tgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactcg 8076392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 11347936 - 11348022
Alignment:
Q  9 tgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||  ||  |||||||||||||||| ||| |  |||||||| ||||||| | ||| |||||||||||||||||| ||||    
T  11347936 tgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactc 11348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 17470487 - 17470405
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| ||| || || ||| ||||||||||| ||| | | |||||||||||||||||||    
T  17470487 gggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactc 17470405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 35965805 - 35965874
Alignment:
Q  26 cacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||||||||||| || |||||||| ||||||  | | | ||||||| |||||||||||||||    
T  35965805 cacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactc 35965874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 45058564 - 45058652
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||||||| || ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  45058564 ttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtcaa-gggtgtattgccacctaagggtgtttatgtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 33118883 - 33118951
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||||| ||| || |||||||||||||||| | ||| ||| |||||||||||||| ||||    
T  33118883 acgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactc 33118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 36707456 - 36707524
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| |  |||||||||||||||| | ||| ||| | |||||||||||||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactc 36707524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 41080790 - 41080707
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcgt 97  Q
    |||||||||||| ||| | ||||||||||  || || |||||||||||| ||||  | | |||||||||||||||||||||||||    
T  41080790 gggtccacatgaccacatatcagatttttgcgtgggtgtcaaagggtgttttgctac-taaggatgtctatgtatcattactcgt 41080707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 51419391 - 51419462
Alignment:
Q  26 cacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcgt 97  Q
    |||||||||||||||| ||| || || ||||| ||||||| |  || |||||||||||||||||| ||||||    
T  51419391 cacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactcgt 51419462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 20764946 - 20765015
Alignment:
Q  26 cacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||||||| ||| || || |||| ||||||| || ||| ||||||||||||| |||| ||||    
T  20764946 cacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataactc 20765015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26754789 - 26754700
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcat 90  Q
    |||| |||||| |||||||  ||| ||| |||||||||||| ||| |  ||| |||||||||||||| ||| ||| |||||||| |||||    
T  26754789 tgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 39670092 - 39670019
Alignment:
Q  14 ggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtat 87  Q
    ||||||||||| ||||||||| |||||||| |||  ||||| || | ||||||| | | |||||||||||||||    
T  39670092 ggtccacatgatcacgtgtcaaatttttatatagatgtcaagggatatattgccacataaggatgtctatgtat 39670019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11511468 - 11511562
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||||||| || |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  11511468 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 50052434 - 50052528
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| |||||||||||||||||||||||    
T  50052434 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 50052528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 50526192 - 50526271
Alignment:
Q  16 tccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||| ||| |||||||||||||||| ||| || |||||||||||||||||| ||| | |||||||||||||||||||||    
T  50526192 tccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 48183055 - 48183149
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| | | ||| |||||||||||||||||||    
T  48183055 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactc 48183149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 8343181 - 8343264
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcg 96  Q
    ||||||| |||  ||| ||||||||||||||||||| |||||||| ||||||||| ||| ||||||| |||||||||| |||||    
T  8343181 gggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactcg 8343264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 41236441 - 41236346
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcg 96  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| |  |||||| ||||||||||| ||| ||| ||||||||||||||||||||    
T  41236441 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcg 41236346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 55475277 - 55475186
Alignment:
Q  9 tgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcgtatg 100  Q
    ||||||||||| |||  ||| |||||||||||| ||| || |||||||||||||||||| ||| ||||||| |||||||||| |||| ||||    
T  55475277 tgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactcttatg 55475186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 480465 - 480547
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| ||| || |||||||||||||||| | ||| ||| |||||||||||||||||||    
T  480465 gggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 6034138 - 6034044
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  || |||||||||||| ||| || |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  6034138 tgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 29234251 - 29234345
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| || |||  |||||||||||||||||  || ||| |||||||||||||||||||    
T  29234251 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcattactc 29234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 40574846 - 40574779
Alignment:
Q  28 cgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||||| ||| || ||||||||||||||| || ||| |||||||||||||||||| ||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 24995113 - 24995207
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  |||||||| |||||||||| || ||||||||||||||||||  || ||| |||| || |||||||||||    
T  24995113 tgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactc 24995207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 42044373 - 42044467
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || ||  |||| ||||||||| ||| ||| |||||||||||||||||||    
T  42044373 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactc 42044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 54473539 - 54473633
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  |||||| |||||||| ||| || |||||| ||||||||| | ||| ||| |||||||||||||||||||    
T  54473539 tgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 3481720 - 3481654
Alignment:
Q  29 gtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||| ||| || ||||||| |||||||||| ||| | | |||||||||||||||||||    
T  3481720 gtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 29239968 - 29239886
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  |||||| |||||||| ||| |  |||||| ||||||||||| ||| ||| |||||||||||||||||||    
T  29239968 gggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 29239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 31910258 - 31910192
Alignment:
Q  29 gtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||| ||| || ||||||| |||||||| | ||| |||||||||||||||||| ||||    
T  31910258 gtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 19670727 - 19670816
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| |||  | ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  19670727 ttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 19670816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 29547994 - 29548059
Alignment:
Q  30 tgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||| ||| || ||||| || ||||||||| ||| ||||||| |||||||||| ||||    
T  29547994 tgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 29548059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 32767047 - 32766958
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||||| |||  ||| |||||||||||| | | || ||||| |||||||||||| ||| ||  ||| |||||||||| ||||    
T  32767047 ttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactc 32766958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 23608303 - 23608235
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || |||||| ||||||||| |  || ||| ||||||| |||||||||||    
T  23608303 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactc 23608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9058574 - 9058480
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| ||||||||||||  ||||||||||||||| ||| || |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  9058574 tgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 20700897 - 20700815
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| |||||| |||||||||||||||||| | | |||||||||||||||||||||||    
T  20700897 gggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactc 20700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 30915545 - 30915463
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||||||| || |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  30915545 gggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 33436305 - 33436211
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||||  |||||||||  |||||||||||||||||||| || |||||| |||||||||||  || |||||||||||||||||||||||    
T  33436305 tgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactc 33436211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 19930826 - 19930917
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcatta 92  Q
    |||| |||||| ||||||||||||  ||||||||||||||| ||| |  |||||||||||||||||| ||| ||| ||||||||||||||||    
T  19930826 tgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 28863549 - 28863458
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcatta 92  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| ||| ||||||||||||||||    
T  28863549 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5574494 - 5574588
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  ||||||||||||||||||| || |||||||||||||||||| ||| ||  |||||||||||||||||||    
T  5574494 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 5574588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33436106 - 33436200
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  |||||| |||||||| ||| || |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  33436106 tgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 40613908 - 40614002
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||  ||  |||||||||||||||| ||| || |||||||||||||||||| ||| |||||||||||||||||| ||||    
T  40613908 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 40701572 - 40701478
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||| |||||||| | |  ||||||||||||||| ||| || |||||| ||||||||||| ||| ||| |||||||||||||||||||    
T  40701572 tgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 7465753 - 7465835
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| ||| || ||||||||||||||||||  || ||| |||||||||||||||||||    
T  7465753 gggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 7465835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 10249388 - 10249482
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||| ||||||||| | ||| ||| |||||||||||||||||||    
T  10249388 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 10249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 13438437 - 13438343
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||| ||||||| | ||| ||| |||||||||||||||||||    
T  13438437 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 17473114 - 17473020
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  ||||||||||||||| ||| || ||||||||||||||||||  || ||| |||||||||||||||||||    
T  17473114 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 32505654 - 32505748
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||| ||||||||| | ||| ||| |||||||||||||||||||    
T  32505654 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 27864786 - 27864704
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| ||| |  |||||||||||||||||| | | ||| |||||||||||||||||||    
T  27864786 gggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 42257287 - 42257193
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||  ||  |||||||||||||||||||| || |||||| | ||||||||| ||| | |||||||||||||||| ||||    
T  42257287 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactc 42257193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 28381687 - 28381755
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || ||| || ||||||||||| ||| ||| |||||||||||||||||||    
T  28381687 acgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 38882832 - 38882913
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| ||| |  |||||||||| ||||||| ||| ||| |||||||||||||||||||    
T  38882832 gggtccacgtgactacgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactc 38882913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 41575219 - 41575138
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattact 94  Q
    |||||||||||| ||| ||||| |||||| |||    ||||||||||||||| ||  || ||||||||||||||||||||||    
T  41575219 gggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcattact 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 2533191 - 2533124
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || |||||||| ||||||||| | | |||||||||||||||||| ||||    
T  2533191 acgtgtcagatttttgtgt-ggtgtcaaaggatgtattgccacttaaggatgtctatgtatcataactc 2533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 4060753 - 4060685
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| |  |||||| ||||||||| | ||| ||| |||||||||||||||||||    
T  4060753 acgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 38273174 - 38273242
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || || |||||||||||||||  || || ||||||||||||||| ||||    
T  38273174 acgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactc 38273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 26891523 - 26891604
Alignment:
Q  14 ggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||| ||| ||| |||||||||||| ||| || ||| | |||||||||||| ||| ||| || ||||||||||| ||||    
T  26891523 ggtccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 43490210 - 43490121
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| ||| || ||||| |||||||||| | ||| ||| ||| |||||||||| ||||    
T  43490210 ttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 45097746 - 45097835
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| | | || ||||| || ||||||||| ||| ||||||| |||||||||| ||||    
T  45097746 ttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 45097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 31953049 - 31953130
Alignment:
Q  14 ggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| |||||||||||||||| || ||||| |||||||||||| ||| ||||||||||| |||||||||||    
T  31953049 ggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32869772 - 32869678
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| ||| |||||||||||| ||||||    
T  32869772 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactc 32869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 22880664 - 22880755
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcatta 92  Q
    |||| |||||| |||||||| |||  |||||||||| |||| ||| || |||||||||||||||||| ||| ||| ||||||||||||||||    
T  22880664 tgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 17598648 - 17598554
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||| | ||||||||| ||| ||| |||||||||||||||||||    
T  17598648 tgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 31976342 - 31976248
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||| ||  ||| |||||||||||||||| ||| || || ||||||| ||||||| ||| |||||||||||||||||| ||||    
T  31976342 tgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactc 31976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31110767 - 31110859
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| ||||||||||||||  ||   ||||||||||||||| ||   | |||||||||||||||||| ||| |||||||||||||||||| ||||    
T  31110767 tgtgcttgtgcagggtccatgtggttacgtgtcagatttttgtga--gtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 31110859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 946442 - 946377
Alignment:
Q  29 gtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattact 94  Q
    |||||||||||||  ||||| |||||||||||||||  | ||| |||||||||||||||| |||||    
T  946442 gtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatcgttact 946377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 11427712 - 11427616
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccct--caggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  ||||||||||||||| ||| || |||||||| ||||||||| |||   ||| |||||||||||||||||||    
T  11427712 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactc 11427616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 15508035 - 15508124
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| ||| || ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  15508035 ttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 15990053 - 15990142
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| ||| || ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  15990053 ttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 30341371 - 30341460
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| ||| || ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  30341371 ttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 30341460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 31109432 - 31109500
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| |  |||||||||||||||||| ||| ||| |||||||  ||||||||||    
T  31109432 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcattactc 31109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 6209478 - 6209565
Alignment:
Q  8 gtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||||| |||  ||||| ||||||||| |||  | ||||||  |||||||||| ||| ||| |||||||||||||||||||    
T  6209478 gtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactc 6209565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 28536519 - 28536582
Alignment:
Q  28 cgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcatt 91  Q
    |||||||||||||| ||| || ||||| || ||||||||| ||| ||||||| |||||||||||    
T  28536519 cgtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcatt 28536582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 4231637 - 4231548
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  |||||||||||||||| ||| || | ||| |||||||||||| ||| | ||||| |||| ||||| ||||    
T  4231637 ttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcataactc 4231548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 29857895 - 29857827
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || || ||| |||||||||||  || | | |||||||||||||||||||    
T  29857895 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 4854869 - 4854963
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| ||||||||||||||  ||  ||| | ||||||||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||||    
T  4854869 tgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactc 4854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5957924 - 5957831
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattact 94  Q
    ||||||||||| || ||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| || |||||||||||||||||||    
T  5957924 tgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcattact 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 504127 - 504221
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||| ||||||||||| ||| ||| |||||||||||||||||||    
T  504127 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 12831141 - 12831047
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||| | ||| ||| |||||||||||||||||||    
T  12831141 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 15197427 - 15197333
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| ||  |||||||||||||||||||    
T  15197427 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 37038573 - 37038479
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| | |||||||||||||||||||||    
T  37038573 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 37038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 40423949 - 40424043
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| ||||||||||||  ||||||||||||||| ||| |  |||||||||||||||||| ||| ||| | |||||||||||||||||    
T  40423949 tgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 20074965 - 20075034
Alignment:
Q  26 cacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||| |||||||||| || ||||||| |||||||||| ||| |||||||||||||||||||||||    
T  20074965 cacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 1179961 - 1180041
Alignment:
Q  16 tccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcg 96  Q
    |||||||||  ||||||||||||||| ||| || ||||||||||||||| || ||| ||| ||||||||||||||||||||    
T  1179961 tccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcg 1180041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 14548016 - 14547913
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcgtatg 100  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||| ||||||||||| ||| ||| |||||||||||| |||||| |||     
T  14548016 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactcttatc 14547917  T
Q  101 aaaa 104  Q
    ||||    
T  14547916 aaaa 14547913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 15048214 - 15048281
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || |||||||||||||||||| ||| |||||||||||||||||| ||||    
T  15048214 acgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 10621119 - 10621182
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcat 90  Q
    ||||||||||||||| ||| || ||||||||||||||| || ||| ||||||||||||||||||    
T  10621119 acgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 23122615 - 23122697
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| ||| || |||||| ||||||||||| | | ||| |||||||||||||||||||    
T  23122615 gggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 34012302 - 34012396
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  |||||||| |||||| ||| || ||||||||||||||| || ||| ||| |||||||||||||||||||    
T  34012302 tgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 43414587 - 43414681
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||  ||| ||||||| |||||||| ||| || |||||||||||| |||||  || |||||||||||||||||| ||||    
T  43414587 tgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 44507105 - 44507187
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| ||| || || |||| ||||||| || ||| ||| |||||||||||||||||||    
T  44507105 gggtccacgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactc 44507187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 16383466 - 16383377
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| ||| || ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  16383466 ttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 30479509 - 30479574
Alignment:
Q  30 tgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||||||| |  |||||||||||||||||| ||| ||| ||| |||||||||| ||||    
T  30479509 tgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 10284637 - 10284731
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  |||||||| |||||| ||| || ||||||| |||||||| | | | ||| |||||||||||||| ||||    
T  10284637 tgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactc 10284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 34307281 - 34307216
Alignment:
Q  30 tgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||| ||| || ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  34307281 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15258935 - 15258979
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgt 45  Q
    |||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  15258935 tgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgt 15258979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2582009 - 2581915
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  2582009 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 2581915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 9474882 - 9474976
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  9474882 tgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27564741 - 27564835
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| || |||||| ||||||||||| ||| |||||||||||||||||||||||    
T  27564741 tgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32813341 - 32813247
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||  ||| |||||||||||||||| ||| || || ||||||||||||||| ||| |||||||||||||||||| ||||    
T  32813341 tgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 51898689 - 51898783
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| | |||||||||||||||||||||    
T  51898689 tgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 51898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 3000401 - 3000318
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactcg 96  Q
    |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| ||| ||| ||||||||||||||||    
T  3000401 gggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactcg 3000318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8346394 - 8346488
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| ||||||||||||||| |||  ||||||||||||||| ||| || |||||| ||||||||||| ||| | | || ||||||||||||||||    
T  8346394 tgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactc 8346488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 23597097 - 23597191
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| ||||||| |||| || ||  |||||||||||||||||||| ||  |||||| |||||||||| ||| | |||||||||||||||||||||    
T  23597097 tgtgtttgtgcaaggtcaacgtggccacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactc 23597191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 48716288 - 48716382
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| |  |||||| ||||||||||| ||| ||| |||||||||||||||||||    
T  48716288 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 37649267 - 37649198
Alignment:
Q  26 cacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||||||| ||| || ||||||| |||||||||| ||| | |||||||||||||||||||||    
T  37649267 cacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44548382 - 44548473
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcatta 92  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| ||  ||||| ||||||||||| ||| | ||||||||||||||||||    
T  44548382 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcatta 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 38595236 - 38595154
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||| |||  ||||||||||||||| ||| || |||||||||||||||||| ||| | | ||| |||||||||||||||    
T  38595236 gggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 38632327 - 38632421
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| |  || ||| ||||||||||| ||| ||| |||||||||||||||||||    
T  38632327 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactc 38632421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 47452326 - 47452420
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| || ||||| |||  |||||| |||||||| ||| || ||||||||||||||| || ||| ||| |||||||||||||||||||    
T  47452326 tgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43226 - 43132
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| | |||||| |||  ||||||||||||||| ||| || |||||||| ||||||| | ||| ||  |||||||||||||||||||    
T  43226 tgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 50630552 - 50630458
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||| |||  ||||||||||||||| ||| ||   |||||| ||||||||| ||| ||| | |||||||||||||||||    
T  50630552 tgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcattactc 50630458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 50591011 - 50591100
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||  ||| |||||||||||| ||| || ||||| |||||||||||| ||| ||| ||| |||||||||| ||||    
T  50591011 ttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 11152389 - 11152476
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattact 94  Q
    |||||| ||||| ||||||  ||||||||||||||| ||| |  ||| |||||||||||||| ||| ||| ||||||||| ||||||||    
T  11152389 ttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaagg-tgtctatgtttcattact 11152476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 41608511 - 41608593
Alignment:
Q  13 gggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||| |||  ||| |||||||||||| |||  | ||||| |||||||||||| ||| ||||||| |||||||||| ||||    
T  41608511 gggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 41758899 - 41758805
Alignment:
Q  1 tgtgattgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||| |||||| |||||||  |||  ||||||||||||||| ||| |  ||||||||||||||||||   | | | |||||||||||||||||||    
T  41758899 tgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcattactc 41758805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 5959011 - 5959100
Alignment:
Q  6 ttgtgcagggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||| ||||||| |||| ||| |||||||||||| ||| || |||||  ||||||||||| | | ||| ||| |||||||||| ||||    
T  5959011 ttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactc 5959100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 37926469 - 37926538
Alignment:
Q  26 cacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    |||||||||||||||||||| || || ||| | ||||||||| ||| | ||| |||||||||||| ||||    
T  37926469 cacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactc 37926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 49811559 - 49811627
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| |  |||||| ||||||||| | ||| ||||||||||| |||||| ||||    
T  49811559 acgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactc 49811627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 10128 - 10209
Alignment:
Q  14 ggtccacatgaacacgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||| |||  ||||||||||||||||||| |  |||||||| ||||||||| ||| | | |||||||||||||| ||||    
T  10128 ggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactc 10209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 961 - 1029
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||| ||||| ||| |  || ||||||||||||||| ||| | |||||||||||||||||||||    
T  961 acgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 961 - 1029
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||| ||||| ||| |  || ||||||||||||||| ||| | |||||||||||||||||||||    
T  961 acgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 4097 - 4029
Alignment:
Q  27 acgtgtcagatttttatgtaggcgtcaaagggtgtattgccccctcaggatgtctatgtatcattactc 95  Q
    ||||||||||||||| ||| || || ||| |||||||||||  || | | |||||||||||||||||||    
T  4097 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University