View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_5 (Length: 576)
Name: NF20497_low_5
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Original strand, 40513127 - 40513675
Alignment:
| Q |
18 |
cttaaaatatgtaaatttaacctctactattaagaccggtgttaaagactaaattgaagaattttcatatactttagagactaaattgacgggttttata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513127 |
cttaaaatatgtaaatttaacctctactattaagactggtgttaaagactaaattgaagaattttcatatactttagagactaaattgacgggttttata |
40513226 |
T |
|
| Q |
118 |
tgctttacaaactgcttatcatatttctttagttttgactttagcagagactacttatcatatttgtatagtttagaggctaaattgaagagatagtagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513227 |
tgctttacaaactgcttatcatatttctttagttttgactttagcagagactacttatcatatttgtatagtttagaggctaaattgaagagatagtagt |
40513326 |
T |
|
| Q |
218 |
tagggtcctacatttaccgtttattctaatctaattggtgatttaactataaagtgaaatgtaataatgtattttgtgctttatccagatatcaagcaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513327 |
tagggtcctacatttaccgtttattctaatctaattggtgatttaactatgaagtgaaatgtaataatgtattttgtgctttatccagatatcaagcaga |
40513426 |
T |
|
| Q |
318 |
atctggatctgaacttgggtatagctcctccttctaactctgatgttcaaatgatgaacatgcaccacaatggaagtggtttgcaagttcagcgtaactg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513427 |
atctggatctgaacttgggtatagctcctccttctaactctgatgttcaaatgatgaacatgcaccacaatggaagtggtttgcaagttcagcgtaactg |
40513526 |
T |
|
| Q |
418 |
ggatgatatgcctgttgataagagtgtaatggtaaggttaaaaaattaatcttttctatattaattctgcaattcctcatgcccctccgctctttcacat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513527 |
ggatgatatgcctgttgataagagtgtaatggtaaggttaaaaaattaatcttttctatattaattctgcaattcctcatgcccctccgctctttcacat |
40513626 |
T |
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| Q |
518 |
gaattcaaagtttgcatacttaacttgcatggtatatttttaatctgtg |
566 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513627 |
gaattcaaagtttgcatacttaacttgcatggtatatttttaatctgtg |
40513675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 22121346 - 22121211
Alignment:
| Q |
18 |
cttaaaatatgtaaatttaacctctactattaagaccggtgttaaagactaaattgaagaattttcatatactttagagactaaattgacgggttttata |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22121346 |
cttaaaatatgtaaatttaacctctactattaagactggtgttaaagactaaattgaagaattttcatatactttagagactaaattgacgggttttata |
22121247 |
T |
|
| Q |
118 |
tgctttacaaactgcttatcatatttctttagtttt |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
22121246 |
tgctttacaaactgcttatcatatttctttagtttt |
22121211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 39406001 - 39405946
Alignment:
| Q |
63 |
agactaaattgaagaattttcatatactttagagactaaattgacgggttttatat |
118 |
Q |
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|||||||||||| | ||| ||||| | || |||||||||||||||||||||||||| |
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| T |
39406001 |
agactaaattgacggattatcatacaattgagagactaaattgacgggttttatat |
39405946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 8121437 - 8121353
Alignment:
| Q |
68 |
aaattgaagaattttcatatactttagagactaaattgacgggttttatatgctttacaaactgcttatcatatttctttagttt |
152 |
Q |
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||||||| | ||||||||||||||||| |||| ||||||| |||||||||| ||||| | ||| |||||||||||| | |||||| |
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| T |
8121437 |
aaattgatggattttcatatactttagggacttaattgaccggttttatatactttaaagactacttatcatatttatatagttt |
8121353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 32708737 - 32708695
Alignment:
| Q |
163 |
agagactacttatcatatttgtatagtttagaggctaaattga |
205 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||||||| |
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|
| T |
32708737 |
agagactagttattatatttgtatagtttagagactaaattga |
32708695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 18754031 - 18754111
Alignment:
| Q |
63 |
agactaaattgaagaattttcatatactttagagactaaattgacgggttttatatgctttacaaactgcttatcatattt |
143 |
Q |
| |
|
|||||||||||| |||||| || ||||||| |||||||||||| |||||||| ||||| ||||| ||||| |||||| |
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| T |
18754031 |
agactaaattgatagattttctaatgctttagaaactaaattgacgaattttatatactttagaaactacttattatattt |
18754111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 51874834 - 51874772
Alignment:
| Q |
57 |
tgttaaagactaaattgaagaattttcatatactttagagactaaattgacgggttttatatg |
119 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||||||||| || ||| ||||| |
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| T |
51874834 |
tgttagagactaaattgatgaattttcatatactttagtgactaaattgatggatttcatatg |
51874772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 32497968 - 32498012
Alignment:
| Q |
62 |
aagactaaattgaagaattttcatatactttagagactaaattga |
106 |
Q |
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|
||||| ||||||||||||||||||||||||| |||| |||||||| |
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| T |
32497968 |
aagacaaaattgaagaattttcatatactttggagattaaattga |
32498012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 25498215 - 25498261
Alignment:
| Q |
63 |
agactaaattgaagaattttcatatactttagagactaaattgacgg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
25498215 |
agactaaattgaagaattttcatatacttttaaaattaaattgacgg |
25498261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 2055558 - 2055513
Alignment:
| Q |
79 |
ttttcatatactttagagactaaattgacgggttttatatgcttta |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| |||| ||||| |
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|
| T |
2055558 |
ttttcatatactttagagactaaattgaccgatttcatatacttta |
2055513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 5099490 - 5099539
Alignment:
| Q |
69 |
aattgaagaattttcatatactttagagactaaattgacgggttttatat |
118 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||| |||| ||| |||| |
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| T |
5099490 |
aattgatgaattttcatatactttagggactaaattaacggatttcatat |
5099539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 24588183 - 24588215
Alignment:
| Q |
76 |
gaattttcatatactttagagactaaattgacg |
108 |
Q |
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||||||||||||||||||| ||||||||||||| |
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|
| T |
24588183 |
gaattttcatatactttagggactaaattgacg |
24588215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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