View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_6 (Length: 528)
Name: NF20497_low_6
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Original strand, 35522082 - 35522582
Alignment:
| Q |
18 |
attgtcaccagcccttagtgttgaaggtgatgaaagagtaagcagcgagacatagcttgtattcttcaaatttgatttatatagtatataagttctatat |
117 |
Q |
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| T |
35522082 |
attgtcaccagcccttagtgttgaatgtgatgaaagagtaagcagcgaggcatagcttgtattcttcaaatttgatttatatagtatataagttctatat |
35522181 |
T |
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| Q |
118 |
gtttatgnnnnnnnnnatccaaacatgacagtgcagtggaagtgatcttgatgaggaaggtttgaatcctcgtgataaaaagccagaccagcaaagcgca |
217 |
Q |
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| T |
35522182 |
gtttatgtttttttttttccaaacatgacagtgcagtggaagtgatcttgatgaggaaggtttgaatcctcgtgataaaaagccagaccagcaaagcgca |
35522281 |
T |
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| Q |
218 |
ccacagtacaaacgtttgattacaatccatgctggtaagcccaagggtcatataagggaccacctaaaagttgctggtgatgttaagcgtttgagcttga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35522282 |
ccacagtacaaacgtttgattacaatccatgctggtaagcccaagggtcatataagggaccacctaaaagttgctggtgatgttaagcgtttgagcttga |
35522381 |
T |
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| Q |
318 |
gtgagcaagaacttgaaaaggcttcggcttcttatggagctgatattgttaggtatttgccaaatagtcacacctagcaccaacactttagattgaatgc |
417 |
Q |
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| T |
35522382 |
gtgagcaagaacttgaaaaggcttcggcttcttatggagctgatattgttaggtatttgccaaatagtcacacctagcaccgacactttagattgaatga |
35522481 |
T |
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| Q |
418 |
atgttgacacagaggaacggtgttacattcggtcacttctattttctcaaattattattgacacctacgtctcagtgttgtgttcattgtctgtatctgt |
517 |
Q |
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| T |
35522482 |
atgttgacacagaggaacgttgttacattcggtcacttctattttctcaaattattattgacacctacgtctcagtgttgtgttcagtgtctgtatttgt |
35522581 |
T |
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| Q |
518 |
g |
518 |
Q |
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| T |
35522582 |
g |
35522582 |
T |
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Back To:
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 29236301 - 29236264
Alignment:
| Q |
439 |
gttacattcggtcacttctattttctcaaattattatt |
476 |
Q |
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| T |
29236301 |
gttacattcaatcacttctattttctcaaattattatt |
29236264 |
T |
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