View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20497_low_8 (Length: 436)

Name: NF20497_low_8
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20497_low_8
NF20497_low_8
[»] chr6 (14 HSPs)
chr6 (36-420)||(30717371-30717761)
chr6 (222-421)||(30717479-30717680)
chr6 (221-399)||(30690285-30690452)
chr6 (306-404)||(30690649-30690748)
chr6 (220-373)||(30690649-30690803)
chr6 (114-421)||(30690820-30691136)
chr6 (74-131)||(30690668-30690725)
chr6 (340-421)||(30690480-30690561)
chr6 (214-251)||(30690363-30690400)
chr6 (225-253)||(30690175-30690203)
chr6 (307-421)||(30690285-30690400)
chr6 (97-133)||(30690400-30690436)
chr6 (74-122)||(30690866-30690914)
chr6 (225-253)||(30691110-30691138)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 36 - 420
Target Start/End: Original strand, 30717371 - 30717761
Alignment:
Q  36 attgttaacaagttgagcccatctctaacattttccactttcttttc--aattaatcatcacctcatattgtttttagataggaatgacactacttaatc 133  Q
    |||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30717371 attgttaacaagttgagcccatctctaatattttccactttctttttcgaattaatcatcacctcatattgtttctagataggaatgacactacttaatc 30717470  T
Q  134 gttggatttatatctatcannnnnnnattcttttgaattaatagtcacctcatattgcttttagataagaatgtcattactt-------gaattcatatc 226  Q
    |||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||    
T  30717471 gttggatt-atatctatcatttttttattcttttgaattaatagtcacctcatattgcttttagataagaatgtcattacttaaccgttgaatccatatc 30717569  T
Q  227 taacatttcctttttcttttgaattaatcgtcttctcttattgcttttagatagaaatgacattacttagccgttgtattcatatctaataattcctttt 326  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||    
T  30717570 caacatttcctttttcttttgaattaatcgtcttctcttattgcttttagataggaatgacactacttaaccgttgtattcatctctaataattcctttt 30717669  T
Q  327 tcttttgaattatcgtcacctcataatgcttctagatagaaatgacaatacttaatctttgaatccatatctaacattcctttttcttttgaat 420  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717670 tcttttgaattatcgtcacctcataatgcttttagat--aaatgacaatacttaatctttgaatccatatctaacattcctttttcttttgaat 30717761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 222 - 421
Target Start/End: Original strand, 30717479 - 30717680
Alignment:
Q  222 atatctaacatttcctttttcttttgaattaatcgtcttctcttattgcttttagatagaaatgacattacttagccgttgtattcatatctaataattc 321  Q
    ||||||| |||||  || ||||||||||||||| |||  ||| |||||||||||||||  |||| ||||||||| |||||| || |||||| || | |||    
T  30717479 atatctatcatttttttattcttttgaattaatagtcacctcatattgcttttagataagaatgtcattacttaaccgttgaatccatatccaacatttc 30717578  T
Q  322 ctttttcttttgaatt-atcgtcacctcataatgcttctagatagaaatgacaatacttaatctttgaatccatatctaa-cattcctttttcttttgaa 419  Q
    |||||||||||||||| ||||||  ||| || ||||| ||||||| ||||||| ||||||| | ||| || ||| |||||  ||||||||||||||||||    
T  30717579 ctttttcttttgaattaatcgtcttctcttattgcttttagataggaatgacactacttaaccgttgtattcatctctaataattcctttttcttttgaa 30717678  T
Q  420 tt 421  Q
    ||    
T  30717679 tt 30717680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 399
Target Start/End: Original strand, 30690285 - 30690452
Alignment:
Q  221 catatctaacatttcctttttcttttgaattaatcgtcttctcttattgcttttagatagaaatgacattacttagccgttgtattcatatctaataatt 320  Q
    |||||||||||||||||||||||||||||||||   ||| ||| |||| |||||||||||  |||||| ||| || || ||| |||||||||||| | ||    
T  30690285 catatctaacatttcctttttcttttgaattaactctctcctcatatttcttttagatag-gatgacactacataaccattgaattcatatctaacattt 30690383  T
Q  321 cctttttcttttgaattatcgtcacctcataatgcttctagatagaaatgacaatacttaatctttgaatccatatcta 399  Q
    | |||||||||| |||          ||||| ||||||||||||| ||||||| ||||||||||||||| |||| ||||    
T  30690384 catttttcttttaaat----------tcatattgcttctagataggaatgacactacttaatctttgaagccatctcta 30690452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 404
Target Start/End: Original strand, 30690649 - 30690748
Alignment:
Q  306 tcatatctaataattcctttttcttttgaatt-atcgtcacctcataatgcttctagatagaaatgacaatacttaatctttgaatccatatctaacatt 404  Q
    |||| ||||| | ||||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||| ||||||| | ||||||| ||||||||||||    
T  30690649 tcatgtctaacatttcctttttcttttgaattcatcgtcaccacatattgcttttagatagaaatgacactacttaaccattgaatcaatatctaacatt 30690748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 373
Target Start/End: Original strand, 30690649 - 30690803
Alignment:
Q  220 tcatatctaacatttcctttttcttttgaattaatcgtcttctcttattgcttttagatagaaatgacattacttagccgttgtattcatatctaataat 319  Q
    |||| ||||||||||||||||||||||||||| ||||||  | | |||||||||||||||||||||||| |||||| || ||| ||  |||||||| | |    
T  30690649 tcatgtctaacatttcctttttcttttgaattcatcgtcaccacatattgcttttagatagaaatgacactacttaaccattgaatcaatatctaacatt 30690748  T
Q  320 tcctttttcttttgaatt-atcgtcacctcataatgcttctagatagaaatgaca 373  Q
    |  ||||  ||||||||| || ||||||||||| | |||| | |||| |||||||    
T  30690749 ttattttatttttgaattaattgtcacctcatatttcttccaaataggaatgaca 30690803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 421
Target Start/End: Original strand, 30690820 - 30691136
Alignment:
Q  114 aggaatgacactacttaatcgttggatttatatctatcannnnnnnattcttttgaattaatagtcacctcatattgcttttagataagaatgtcattac 213  Q
    ||||||||||||||||| | |||| ||  ||||||||||        ||||||||||||||   |||||||||||||||| |||||| ||||| | |||     
T  30690820 aggaatgacactacttagttgttgcatccatatctatcatttcctttttcttttgaattaactatcacctcatattgcttctagataggaatgaccttaa 30690919  T
Q  214 ---ttgaattcatatctaacatttcctttttcttttgaattaat-cgtcttctcttattgcttttagatagaaatgacattacttagccgttgtattcat 309  Q
       |||||| ||||||||||||||||| |||    ||||||    | ||  ||| |||||||| ||||||  |||| || ||||||||||||| |  |||    
T  30690920 ccgttgaatccatatctaacatttcctctttagaatgaattgtcacctcacctcatattgcttctagatatgaatggcactacttagccgttgaaaccat 30691019  T
Q  310 atctaataattcctttttcttttgaattatcg----tcacctcataatgcttctagatagaaatgacaatacttaatctttgaatccatatctaacatt- 404  Q
    |||||| | |||||||||||||| |||||       |||||||||| |||||||||  |  ||||||| ||||||| | ||||||| || |||||||||     
T  30691020 atctaacatttcctttttcttttcaattaagtactatcacctcatattgcttctaggcatgaatgacactacttaaccgttgaatctatgtctaacattt 30691119  T
Q  405 cctttttcttttgaatt 421  Q
    |||||||||||||||||    
T  30691120 cctttttcttttgaatt 30691136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 30690668 - 30690725
Alignment:
Q  74 tttcttttcaattaatcatcacctcatattgtttttagataggaatgacactacttaa 131  Q
    |||||||| |||| ||| ||||| ||||||| |||||||||| |||||||||||||||    
T  30690668 tttcttttgaattcatcgtcaccacatattgcttttagatagaaatgacactacttaa 30690725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 421
Target Start/End: Original strand, 30690480 - 30690561
Alignment:
Q  340 cgtcacctcataatgcttctagatagaaatgacaatacttaatctttgaatccatatctaacatt-cctttttcttttgaatt 421  Q
    |||||||||||| || |||||||||| || |||  ||||||| | ||||||||||||  |||||| |||||||||||||||||    
T  30690480 cgtcacctcatattgattctagataggaacgac-ttacttaagcgttgaatccatattaaacattacctttttcttttgaatt 30690561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 30690363 - 30690400
Alignment:
Q  214 ttgaattcatatctaacatttcctttttcttttgaatt 251  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  30690363 ttgaattcatatctaacatttcatttttcttttaaatt 30690400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 30690175 - 30690203
Alignment:
Q  225 tctaacatttcctttttcttttgaattaa 253  Q
    |||||||||||||||||||||||||||||    
T  30690175 tctaacatttcctttttcttttgaattaa 30690203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 30690285 - 30690400
Alignment:
Q  307 catatctaataattcctttttcttttgaattatc-gtcacctcataatgcttctagatagaaatgacaatacttaatctttgaatccatatctaaca-tt 404  Q
    ||||||||| | |||||||||||||||||||| |  || ||||||| | ||| |||||||  |||||| ||| ||| | |||||| ||||||||||| ||    
T  30690285 catatctaacatttcctttttcttttgaattaactctctcctcatatttcttttagatag-gatgacactacataaccattgaattcatatctaacattt 30690383  T
Q  405 cctttttcttttgaatt 421  Q
    | |||||||||| ||||    
T  30690384 catttttcttttaaatt 30690400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 30690400 - 30690436
Alignment:
Q  97 tcatattgtttttagataggaatgacactacttaatc 133  Q
    |||||||| || |||||||||||||||||||||||||    
T  30690400 tcatattgcttctagataggaatgacactacttaatc 30690436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 30690866 - 30690914
Alignment:
Q  74 tttcttttcaattaatcatcacctcatattgtttttagataggaatgac 122  Q
    |||||||| ||||||  |||||||||||||| || ||||||||||||||    
T  30690866 tttcttttgaattaactatcacctcatattgcttctagataggaatgac 30690914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 30691110 - 30691138
Alignment:
Q  225 tctaacatttcctttttcttttgaattaa 253  Q
    |||||||||||||||||||||||||||||    
T  30691110 tctaacatttcctttttcttttgaattaa 30691138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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