View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20497_low_9 (Length: 429)
Name: NF20497_low_9
Description: NF20497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20497_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 232 - 414
Target Start/End: Complemental strand, 39788522 - 39788338
Alignment:
| Q |
232 |
tcttgtgaccaaaattgaa--ttgaattgaattgctcacacctattaatcttccagattttctgcacgaggaaattgagttatcaaatttctaacgaaat |
329 |
Q |
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| T |
39788522 |
tcttgtgaccaaaattgaaaattgaattgaattgctcacacctattaatcttccagattttctgcacgaggaaattgagttatcaaatttctaacgaaat |
39788423 |
T |
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| Q |
330 |
tttgtctaaacaaataagaaaaaatccttacgaaattcatttaacgtaagaaaaattaaatatacttttcagttagtgaaattct |
414 |
Q |
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| T |
39788422 |
tttgtctaaacaaataagaaaaaatccttacgaaattcatttaacgtaagaaaaattaaatatacttttcagttagtgaaattct |
39788338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 39788801 - 39788572
Alignment:
| Q |
20 |
gaaaagtacttggaaaaatcattgtcattaccttttgtcacataatataaaacatga----------------ggccaagtagtccttgaccaaccatta |
103 |
Q |
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| T |
39788801 |
gaaaagtacttggaaaaatcattgtcattaccttttgtcacataatataaaacatgataaaattaaaacatgaggccaagtagtccttcaccaaccatta |
39788702 |
T |
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| Q |
104 |
catgaggagcatatcctcctccacaaggtagcaaagaaaaatgttgatgcattattatcaaaaacaaacaaaggaaaatgttcgtgaaaccgatatacta |
203 |
Q |
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| T |
39788701 |
catgaggagcatatcctcctccacgaggtagcaaagaaaaatgttgatgcattattatcaaaaacaaacaaaggaaaatgttcgtgaaaccgatatacta |
39788602 |
T |
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| Q |
204 |
catgttttaacccacacaaaaaattatatc |
233 |
Q |
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| T |
39788601 |
catgttttaacccacacaaaaaattatatc |
39788572 |
T |
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