View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20498_high_1 (Length: 670)

Name: NF20498_high_1
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20498_high_1
NF20498_high_1
[»] scaffold0603 (1 HSPs)
scaffold0603 (18-564)||(1816-2362)
[»] chr1 (1 HSPs)
chr1 (34-324)||(17314353-17314641)
[»] chr3 (12 HSPs)
chr3 (18-318)||(2922108-2922406)
chr3 (35-284)||(5968412-5968661)
chr3 (36-267)||(11488628-11488859)
chr3 (28-285)||(11494852-11495109)
chr3 (42-321)||(10187258-10187534)
chr3 (42-321)||(10080288-10080558)
chr3 (42-104)||(3872725-3872788)
chr3 (42-228)||(4132866-4133055)
chr3 (161-267)||(3872789-3872895)
chr3 (44-86)||(4057663-4057705)
chr3 (36-85)||(909088-909137)
chr3 (175-219)||(4104609-4104653)
[»] chr5 (1 HSPs)
chr5 (34-570)||(16449381-16449910)
[»] chr4 (2 HSPs)
chr4 (28-288)||(5991113-5991373)
chr4 (613-643)||(5992484-5992514)
[»] chr8 (1 HSPs)
chr8 (36-324)||(18390649-18390934)


Alignment Details
Target: scaffold0603 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 2362 - 1816
Alignment:
Q  18 gttttagtggtaaaatcattgatcggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaa 117  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2362 gttttagtggtaaaagcattgattggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctctgaaactcaggttgttgccaaa 2263  T
Q  118 gaaaggatttccttcctctcttttagtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||||    
T  2262 gaaaggatttccttcctctcttttagtgctaaatatgactcactgtccattactggaagcaagtttccggaggaagcaagggaaagagtggcgtaagatt 2163  T
Q  218 gcccacattccctccataattatagatgacgaattgattacatgagtttcctattcgggtgagtctctgaaaggcttctattttttgtttctttcttatt 317  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2162 gcccacattccctccataattatagatgatgaattgataacatgagtttcctattcgggtgagtctctgaaaggcttctattttttgtttctttcttact 2063  T
Q  318 atgtcatgcttaaataacattcttaatttcattatcaacttcgagataccatattataactctaacactgacttgtttttctaattatagaattgtattc 417  Q
    ||||||||||||| ||||||||||||||| ||||||||| || |||||||||||| ||||||||||||||| ||  ||||||||| ||||||||||||||    
T  2062 atgtcatgcttaattaacattcttaattttattatcaacatcaagataccatattgtaactctaacactgatttacttttctaatgatagaattgtattc 1963  T
Q  418 tgtcacccctgcttcttccaaatcttgctgttgtgagaagtcaaatttacatgcacaacctgcaaccaggtccattaattttttactgatgacgaacgga 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| ||||||| |||| ||| |||    
T  1962 tgtcacccctgcttcttccaaatcttgctgttgtgagaagtcaaatttgcatgcacaaccttcaaccaagtccattaatgttttactaatgaggaatgga 1863  T
Q  518 tgaaaaagagaaacagaaactgacttcaaatatgttaggtactcttt 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1862 tgaaaaagagaaacagaaactgacttcaaatatgttaggtactcttt 1816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 8e-66; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 34 - 324
Target Start/End: Original strand, 17314353 - 17314641
Alignment:
Q  34 cattgatcggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaagaaaggatttccttcc 133  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| | |||||| ||| | | ||| || ||||||    
T  17314353 cattgatgagaagtggcttcaacatctcacttctctccaaaaccttgagattgttaacgcccccaaactgaagttgttaccagaaagaggtttgccttcc 17314452  T
Q  134 tctcttttagtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattccctcca 233  Q
    |||||||| || ||||||||||||| ||| ||| | ||  ||| ||| |||| |||||||| ||| |||||||| ||||||||||| |||||||||||||    
T  17314453 tctcttttggtactaaatatgactcgctgcccaatgctcaaagaaagtttgcggaggaagcgaggaaaagagtggcgtaagattgctcacattccctcca 17314552  T
Q  234 taattatagatgacgaattgattacatgagtttcctattcgggtgagtctctgaaaggcttctattttttgtttctttcttattatgtcat 324  Q
    ||||||| |||||  | ||||| ||||||||||||||| | |||||||| ||||||  |  ||||||||||||||||||||||||||||||    
T  17314553 taattatcgatgataatttgatcacatgagtttcctatactggtgagtcactgaaa--cacctattttttgtttctttcttattatgtcat 17314641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 2922108 - 2922406
Alignment:
Q  18 gttttagtggtaaaatcattgatcggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaa 117  Q
    |||||| ||||| ||  |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||  | |||||||||    
T  2922108 gttttaatggtacaagaattgatgggaagtggcttcaacatctcacctctctccaaaagcttgagattgttaatgctcccaaactcaattcgttgccaaa 2922207  T
Q  118 gaaaggatttccttcctctcttttagtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagatt 217  Q
     |||||||| ||| | ||||||| |||||||| ||||   |  ||||||||||| ||||||||  ||| |||||||||||||||| |||| ||||| |||    
T  2922208 aaaaggattgcctacatctctttcagtgctaattatggaccgttgtccattactagaagcaagtgtgcggaggaagcaagggaaaaagtggcgtaacatt 2922307  T
Q  218 gcccacattccctccataattatagatgacgaattgattacatgagtttcctattcgggtgagtctctgaaaggcttctattttttgtttctttcttatt 317  Q
    || ||| ||| ||||||| |||| |||| |||| |||| |||||||||||||||| ||||||||| ||||||  ||||  ||||||||||||||||||||    
T  2922308 gctcacgttctctccatagttatcgatggcgaactgatcacatgagtttcctatttgggtgagtcactgaaatacttc--ttttttgtttctttcttatt 2922405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 35 - 284
Target Start/End: Original strand, 5968412 - 5968661
Alignment:
Q  35 attgatcggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaagaaaggatttccttcct 134  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| | ||  |||||||| |||||||| |||||||    
T  5968412 attgatgggaagtggcttcaacatctgacttctctccaaaaccttgagattgttaacgctcccaaactaaagtcattgccaaaaaaaggattgccttcct 5968511  T
Q  135 ctcttttagtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattccctccat 234  Q
    |||||| ||| |||| ||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||| |||||||| || ||    
T  5968512 ctctttcagtactaagtatgactcactgtccgttactggatgcaagtttgcggaggaagcaagggaaagagtggcgtaagattgctcacattccgtctat 5968611  T
Q  235 aattatagatgacgaattgattacatgagtttcctattcgggtgagtctc 284  Q
    ||||||  | || ||| | || |||||| |||| | ||||||||||||||    
T  5968612 aattatcaacgatgaaataatcacatgattttcatgttcgggtgagtctc 5968661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 36 - 267
Target Start/End: Complemental strand, 11488859 - 11488628
Alignment:
Q  36 ttgatcggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaagaaaggatttccttcctc 135  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||  |||||||| |||||||| ||||||||    
T  11488859 ttgatgggaagtggcttcaacatctcacttctctccaaaaccttgagattattaatgctcccaaactcaagtcattgccaaaaaaaggattgccttcctc 11488760  T
Q  136 tcttttagtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattccctccata 235  Q
    ||||| ||| ||||||||||||| ||| ||||| || |||||||  |||| |||||||||||||||||||||  |||||||||| ||||| ||   ||||    
T  11488759 tctttcagtactaaatatgactcgctgcccattgctcgaagcaattttgcggaggaagcaagggaaagagtggagtaagattgctcacatacctgtcata 11488660  T
Q  236 attatagatgacgaattgattacatgagtttc 267  Q
    ||||| ||||| |||||||| |||||||||||    
T  11488659 attattgatgatgaattgatcacatgagtttc 11488628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 28 - 285
Target Start/End: Complemental strand, 11495109 - 11494852
Alignment:
Q  28 taaaatcattgatcggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaagaaaggattt 127  Q
    ||||| |||||||  ||||||| || |||||||||| ||||||||||||||||||||||| || ||||| ||||| | || |||||| || || |||||     
T  11495109 taaaagcattgatgagaagtggtttgaacatctcacctctctccaaaaccttgagattgtgaacgctcccaaacttaagtcgttgccgaaaaagggattg 11495010  T
Q  128 ccttcctctcttttagtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattc 227  Q
    |||||||  |||| |||  |||||||||||  ||||||||||||| ||||||  ||||| ||||||| ||||||||| || ||||||||||| || ||||    
T  11495009 ccttcctggctttcagttataaatatgacttgctgtccattactgaaagcaaaattgcaaaggaagcgagggaaagaatggcgtaagattgctcatattc 11494910  T
Q  228 cctccataattatagatgacgaattgattacatgagtttcctattcgggtgagtctct 285  Q
    ||||||||||||| |||||||||||||| |||||||| || | | |||||||||||||    
T  11494909 cctccataattatcgatgacgaattgatcacatgagtatcttgtccgggtgagtctct 11494852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 42 - 321
Target Start/End: Original strand, 10187258 - 10187534
Alignment:
Q  42 ggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaagaaaggatttccttcctctctttt 141  Q
    |||||||| ||  |||||||| |||||||| |||||||||||||||||| ||||| ||||||  || |||||||||  ||||||| ||| ||||| |||     
T  10187258 ggaagtggtttttacatctcagttctctccgaaaccttgagattgttaacgctcccaaactcgagtcgttgccaaacgaaggattgcctacctctatttc 10187357  T
Q  142 agtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattccctccataattata 241  Q
     || |||| | | |||| |||||||||||| |||||| |||||||||| ||||||||||||||||| | |||||||   ||||| ||  ||||||||||     
T  10187358 tgtactaagtttaactcgctgtccattacttgaagcagggttgcagagcaagcaagggaaagagtggcataagattcttcacatacctgccataattatt 10187457  T
Q  242 gatgacgaattgattacatgagtttcctattcgggtgagtctctgaaaggcttctattttttgtttctttcttattatgt 321  Q
    |||||| |||| || ||||||||||| |||   |||||||||||||||  ||||   |||||||||||||||||||||||    
T  10187458 gatgacaaattaatcacatgagtttcatatcttggtgagtctctgaaatacttc---tttttgtttctttcttattatgt 10187534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 42 - 321
Target Start/End: Original strand, 10080288 - 10080558
Alignment:
Q  42 ggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaagaaaggatttccttcctctctttt 141  Q
    |||||||| ||  |||||||| |||||||| |||||||||||||||||| ||||| ||||||  || |||||||||  ||||||| ||| ||||| |||     
T  10080288 ggaagtggtttttacatctcagttctctccgaaaccttgagattgttaacgctcccaaactcgagtcgttgccaaatgaaggattgcctacctctatttc 10080387  T
Q  142 agtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattccctccataattata 241  Q
     || |||| | | |||| |||||||||||| |||||| |||||||||| ||||      ||||||| |||||||||   ||||| ||  ||||||||||     
T  10080388 tgtactaagtttaactcgctgtccattacttgaagcagggttgcagagcaagc------aagagtggcgtaagattcttcacatacctgccataattatt 10080481  T
Q  242 gatgacgaattgattacatgagtttcctattcgggtgagtctctgaaaggcttctattttttgtttctttcttattatgt 321  Q
    |||||| |||| || ||||||||||| |||   |||||||||||||||  ||||   |||||||||||||||||||||||    
T  10080482 gatgacaaattaatcacatgagtttcatatcttggtgagtctctgaaatacttc---tttttgtttctttcttattatgt 10080558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 3872725 - 3872788
Alignment:
Q  42 ggaagtggcttcaacatctcacttctctcc-aaaaccttgagattgttaatgctccgaaactca 104  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||    
T  3872725 ggaagtggcttcaacatctcacttctctccaaaaactttgagattgttaacgctcccaaactca 3872788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 4132866 - 4133055
Alignment:
Q  42 ggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaagaaagg---atttccttcctctct 138  Q
    |||||||||||||||||||||| ||||||||| |  |||| ||| || ||||||| || |||| || ||||||||| || ||    || |||||||| ||    
T  4132866 ggaagtggcttcaacatctcacctctctccaacattttgatattattgatgctcccaagctcaagtcgttgccaaaaaaggggaagttgccttcctccct 4132965  T
Q  139 tttagtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattcc 228  Q
    |  |||| | ||||| |   | ||||| ||  || ||||||| | ||||| ||||| |||||||||||| ||||||||||| ||||||||    
T  4132966 taaagtgttgaatatcaaaaagtgtccgttgttgaaagcaagttggcagaagaagcgagggaaagagtggcgtaagattgctcacattcc 4133055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 3872789 - 3872895
Alignment:
Q  161 tgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattccctccataattatagatgacgaattgattacat 260  Q
    ||||||||||| |||||||| |||| |||||||| ||||||  ||||  |||| ||||| ||| | ||  |||||||||| ||||||||| |||| ||||    
T  3872789 tgtccattacttgaagcaagtttgcggaggaagcgagggaagaagtggtgtaaaattgctcacgtgcctgccataattattgatgacgaactgatcacat 3872888  T
Q  261 gagtttc 267  Q
     ||||||    
T  3872889 aagtttc 3872895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 4057705 - 4057663
Alignment:
Q  44 aagtggcttcaacatctcacttctctccaaaaccttgagattg 86  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||    
T  4057705 aagtggcttcaacatctcacctctctccaaaaacttaagattg 4057663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 909137 - 909088
Alignment:
Q  36 ttgatcggaagtggcttcaacatctcacttctctccaaaaccttgagatt 85  Q
    ||||| ||||||||||  | |||||||| |||||||||||||||||||||    
T  909137 ttgatgggaagtggctcgaccatctcacctctctccaaaaccttgagatt 909088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 4104653 - 4104609
Alignment:
Q  175 agcaaggttgcagaggaagcaagggaaagagtgacgtaagattgc 219  Q
    |||||| |||| ||||||| ||||||||||||| |||||||||||    
T  4104653 agcaagtttgctgaggaaggaagggaaagagtggcgtaagattgc 4104609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 34 - 570
Target Start/End: Original strand, 16449381 - 16449910
Alignment:
Q  34 cattgatcggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaagaaaggatttccttcc 133  Q
    ||||||| ||||||||||||||||||||   ||||||||||| ||||||||| |||||||||| ||||||| | |||| || || |||||||||||||||    
T  16449381 cattgatgggaagtggcttcaacatctcgtctctctccaaaaacttgagattattaatgctcccaaactcaagatgtttcctaaaaaaggatttccttcc 16449480  T
Q  134 tctcttttagtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattccctcca 233  Q
    ||||||| |||||||| ||||||||  ||||||||||| ||||||||  |||  ||||||| |||||||||||| ||||||||||| || ||||||||||    
T  16449481 tctctttcagtgctaagtatgactcggtgtccattactagaagcaagtgtgcgcaggaagcgagggaaagagtggcgtaagattgctcatattccctcca 16449580  T
Q  234 taattatagatgacgaattgattacatgagtttcctattcgggtgagtctctgaaaggcttctattttttgtttctttcttattatgtcatgcttaaata 333  Q
    || |||| ||||| ||| | || || |||||||  |||| |||||||||  |||||  |||||  |||||||| |||||||   |||| ||  | || ||    
T  16449581 tagttatcgatgatgaacttatcacctgagttttttatttgggtgagtcagtgaaatacttct--tttttgttcctttctt---atgtgatcatcaatta 16449675  T
Q  334 acattcttaatttcattatcaacttcgagataccatattataactctaacactgacttgtttttctaattatagaattgtattct--gtcacccctgctt 431  Q
    | ||| ||| ||||| ||   || || | |||| |||| | |||  | || |     | |||||| | | |||||||||||||||  ||||||||| |||    
T  16449676 atatttttattttcaatagttacatcaaaatacaatataacaacaattactca----tttttttcaattcatagaattgtattctctgtcacccctactt 16449771  T
Q  432 cttccaaatcttgctgttgtgagaagtcaaatttacatgcacaacctgcaaccaggtcca-ttaattttttactgatgacgaacggatgaaaaagagaaa 530  Q
    || || ||| |||||||||||||||||||||||| |||| |||||||||||||| ||||| | ||| ||||||| || | |||| |||||||| ||||||    
T  16449772 ctgcccaatattgctgttgtgagaagtcaaattttcatgtacaacctgcaaccaagtccagtcaatgttttactaatcatgaacagatgaaaaggagaaa 16449871  T
Q  531 cagaaactgacttcaaatatgttaggtactctttctgtct 570  Q
    ||  | ||| |  |||||||||| |||||||||| |||||    
T  16449872 caacacctg-ccgcaaatatgtttggtactctttttgtct 16449910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 28 - 288
Target Start/End: Original strand, 5991113 - 5991373
Alignment:
Q  28 taaaatcattgatcggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaagaaaggattt 127  Q
    ||||| ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||| ||||| ||||||| ||  ||||||||  |||||||     
T  5991113 taaaagcattgatgggaagtggtttcaacatctcacctttctccaaaaccttgagattgttaacgctcccaaactcaagtcattgccaaaagaaggattg 5991212  T
Q  128 ccttcctctcttttagtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattc 227  Q
    ||||||||||||| ||| |||| ||| ||||  ||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||| || ||||    
T  5991213 ccttcctctctttcagtactaagtattactcgttgtccattactggtagcaaagttgcagaggaagcgagggaaagagtggcgtaagattgctcatattc 5991312  T
Q  228 cctccataattatagatgacgaattgattacatgagtttcctattcgggtgagtctctgaa 288  Q
    |  ||||| |||| ||||| |||||||| |||| |||||||| |   ||||||||||||||    
T  5991313 ctgccatagttatcgatgatgaattgatcacataagtttcctgtctaggtgagtctctgaa 5991373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 613 - 643
Target Start/End: Original strand, 5992484 - 5992514
Alignment:
Q  613 agtattgtgtttttctccctccctcagttta 643  Q
    |||||||||||||||||||||||||||||||    
T  5992484 agtattgtgtttttctccctccctcagttta 5992514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 36 - 324
Target Start/End: Original strand, 18390649 - 18390934
Alignment:
Q  36 ttgatcggaagtggcttcaacatctcacttctctccaaaaccttgagattgttaatgctccgaaactcaggttgttgccaaagaaaggatttccttcctc 135  Q
    ||||| |||||||||||||||||||  ||||||| |||||||||||||||||||| ||||| ||||||| || ||||||||| |||| ||| | ||||||    
T  18390649 ttgatgggaagtggcttcaacatcttccttctcttcaaaaccttgagattgttaacgctcccaaactcaagtcgttgccaaaaaaagaattgctttcctc 18390748  T
Q  136 tcttttagtgctaaatatgactcactgtccattactggaagcaaggttgcagaggaagcaagggaaagagtgacgtaagattgcccacattccctccata 235  Q
    ||||| ||| |||||| |||||   ||||||||| |||||| ||| |||| || ||||| |||||||||||| | ||||||| | |||||||||| ||||    
T  18390749 tctttcagtactaaatgtgacttgttgtccattattggaaggaagtttgcggaagaagcgagggaaagagtggcataagatttctcacattcccttcata 18390848  T
Q  236 attatagatgacgaattgattacatgagtttcctattcgggtgagtctctgaaaggcttctattttttgtttctttcttattatgtcat 324  Q
    |||||  | ||||||||||| | || | ||||   ||   ||||||||||||||  ||| | ||||||||||| ||| |||||||||||    
T  18390849 attatcaacgacgaattgatcaaataactttc---ttgtcgtgagtctctgaaatacttgttttttttgtttcgttcctattatgtcat 18390934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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