View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20498_high_10 (Length: 422)

Name: NF20498_high_10
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20498_high_10
NF20498_high_10
[»] chr3 (1 HSPs)
chr3 (4-404)||(36745223-36745623)
[»] chr8 (14 HSPs)
chr8 (161-266)||(6274156-6274261)
chr8 (161-266)||(6288406-6288511)
chr8 (140-406)||(6450315-6450581)
chr8 (161-266)||(6331535-6331640)
chr8 (161-266)||(6351894-6351999)
chr8 (161-406)||(6456577-6456822)
chr8 (161-260)||(6390630-6390729)
chr8 (161-251)||(7458732-7458822)
chr8 (161-266)||(6321028-6321133)
chr8 (161-260)||(6409835-6409934)
chr8 (161-263)||(6362830-6362932)
chr8 (348-406)||(6262699-6262757)
chr8 (161-251)||(7471134-7471224)
chr8 (349-406)||(6409689-6409746)
[»] chr1 (1 HSPs)
chr1 (163-266)||(36925655-36925758)
[»] chr5 (2 HSPs)
chr5 (140-406)||(9605567-9605833)
chr5 (70-142)||(9605326-9605398)
[»] chr2 (1 HSPs)
chr2 (328-406)||(42689192-42689270)


Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 4 - 404
Target Start/End: Original strand, 36745223 - 36745623
Alignment:
Q  4 gatgtcgaagaatatggagctgtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttg 103  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745223 gatggcgaaaaatatggagctgtgagtaaagtgctgttgcctccagaaggacatggtgttcaaagaacaatttggcaattggccaaggcgtatgtagttg 36745322  T
Q  104 taaatgacgcctgctttcaccaactcatgagtcactggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36745323 taaatgacgcctgctttcaccaactcatgagtcactggttgaatacacattgcgtgattgagccattcatcatagctacaaataggtgtctcagtgtggt 36745422  T
Q  204 tcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagag 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745423 tcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagag 36745522  T
Q  304 caagcatttttgccaggaccgtacgctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaaga 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745523 caagcatttttgccaggaccgtacgctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaaga 36745622  T
Q  404 g 404  Q
    |    
T  36745623 g 36745623  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 6274261 - 6274156
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 260  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||||||||| |||  || |||||||||||||||||||| || |||||    
T  6274261 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattcataagcttttacttccgcactatcgtgacacaatgaacattaatgc 6274162  T
Q  261 acttgc 266  Q
    ||||||    
T  6274161 acttgc 6274156  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 6288511 - 6288406
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 260  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||||||||||||||||||| |||  || |||||||||||||||||||| || |||||    
T  6288511 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcatcctattcataagcttttacttccgcactatcgtgacacaatgaacattaatgc 6288412  T
Q  261 acttgc 266  Q
    ||||||    
T  6288411 acttgc 6288406  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 406
Target Start/End: Complemental strand, 6450581 - 6450315
Alignment:
Q  140 ggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcg 239  Q
    |||||||||| |||   ||||| || |||||||||||||| |||||||||  ||| |||||  |||| || ||| |||||||| ||   || || || ||    
T  6450581 ggttgaatactcatgcagtgatggaaccattcatcatagcaacaaatagacatctaagtgtacttcacccgattaataagcttttattcccccattaccg 6450482  T
Q  240 tgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccgtacgctgttgagatg 339  Q
    ||||||||| |||||||||| |||||||||     |  | |||| ||  || ||||||||||||||| ||||||  ||||||||  |  |  |||||||     
T  6450481 tgacacaataaatatcaatggacttgctcgacaagctctaatcaatgctggcggcattatagagcaaacattttgtccaggaccaaattccattgagatt 6450382  T
Q  340 tcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 406  Q
    || ||||||||||||||| ||||||||||  |||| |||||| |||| |||||||||||||||||||    
T  6450381 tcttctgcagtttacaagaattgggttttcactgatcaagcattaccagctgatcttatcaagaggt 6450315  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 6331640 - 6331535
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 260  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| |||||||| || |||||||  || || ||||||||||||||||| || |||||    
T  6331640 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcacaaacttctacttccacattatcgtgacacaatgaacattaatgc 6331541  T
Q  261 acttgc 266  Q
    ||||||    
T  6331540 acttgc 6331535  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 6351999 - 6351894
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 260  Q
    ||||||||||||||||||| ||||| ||   ||| ||||||||||| ||||||||||| ||| |||  |||||||| |||||||||||||| || |||||    
T  6351999 ttgagccattcatcatagcaacaaacaggcatcttagtgtggttcaccctattcataaacttttacttcctcactaccgtgacacaatgaacataaatgc 6351900  T
Q  261 acttgc 266  Q
    ||||||    
T  6351899 acttgc 6351894  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 406
Target Start/End: Complemental strand, 6456822 - 6456577
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 260  Q
    |||| |||||||||||||| ||||||||   ||| |||||  |||| || ||| |||| ||| ||   ||||| |  ||||||||||| ||||||||||     
T  6456822 ttgaaccattcatcatagcaacaaataggcatctaagtgttcttcacccaattaataaacttttatttcctcatttccgtgacacaataaatatcaatgg 6456723  T
Q  261 acttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccgtacgctgttgagatgtcgtctgcagtttacaaggat 360  Q
    |||||||||    ||  | |||| ||  |||||||||||||||||| ||||||||||||||||  |  | || ||||| || ||   |||||||| ||||    
T  6456722 acttgctcgacaatctctaatcaatgctggtggcattatagagcaaacatttttgccaggaccaaattcagtcgagatttcttcaatagtttacagggat 6456623  T
Q  361 tgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 406  Q
    ||||||||  | ||||||||| |||| |||||||||||||||||||    
T  6456622 tgggttttcaccgaccaagcattaccggctgatcttatcaagaggt 6456577  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 6390729 - 6390630
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 260  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||| |||  || ||||||||| |||||||||| || |||||    
T  6390729 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaacttttacttccacactatcgtaacacaatgaacataaatgc 6390630  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 7458822 - 7458732
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaa 251  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||| |||  || ||||| ||||||||||||||    
T  7458822 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaacttttacttccacactaccgtgacacaatgaa 7458732  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 6321133 - 6321028
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 260  Q
    ||||||||||||||||||| || |||||   ||| ||||||||||| |||||||| || ||||| |  || || ||||||||||||||||| || |||||    
T  6321133 ttgagccattcatcatagcaactaataggcatcttagtgtggttcaccctattcacaaacttctgcttccacattatcgtgacacaatgaacattaatgc 6321034  T
Q  261 acttgc 266  Q
    ||||||    
T  6321033 acttgc 6321028  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 6409934 - 6409835
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 260  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| ||||||||||| ||  |||  || ||||||||| |||||||||| || |||||    
T  6409934 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccctattcataaactattacttccacactatcgtaacacaatgaacataaatgc 6409835  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 6362932 - 6362830
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgc 260  Q
    ||||||||||| ||||||| ||||||||   ||| ||||||||||| ||||||||||| ||||| |  || || ||||||||||| ||||| || |||||    
T  6362932 ttgagccattcgtcatagcaacaaataggcatctaagtgtggttcaccctattcataaacttctgcttccacattatcgtgacacgatgaacataaatgc 6362833  T
Q  261 act 263  Q
    |||    
T  6362832 act 6362830  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 6262757 - 6262699
Alignment:
Q  348 agtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 406  Q
    |||||| ||||||||||||||| | |||||||| || ||||||||||||||||| ||||    
T  6262757 agtttataaggattgggtttttacagaccaagccctccctgctgatcttatcaaaaggt 6262699  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 7471224 - 7471134
Alignment:
Q  161 ttgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaa 251  Q
    ||||||||||||||||||| ||||||||   ||| ||||||||||| | ||||||||| ||| |||  || |||||  |||||||||||||    
T  7471224 ttgagccattcatcatagcaacaaataggcatcttagtgtggttcaccatattcataaacttttacttccacactactgtgacacaatgaa 7471134  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 6409746 - 6409689
Alignment:
Q  349 gtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 406  Q
    |||||||||||||||||||| || || ||||||||||||  |||||| ||||| ||||    
T  6409746 gtttacaaggattgggttttcccggatcaagcactacctaatgatctaatcaaaaggt 6409689  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 36925655 - 36925758
Alignment:
Q  163 gagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcgtgacacaatgaatatcaatgcac 262  Q
    |||||||||||||||||| |||||||  |||| |||||  |||| ||||||||||||||  |||| ||||||| ||||||||| |||||||| |||| ||    
T  36925655 gagccattcatcatagcttcaaataggcgtcttagtgtacttcaccctattcataagctattacatcctcactttcgtgacaccatgaatataaatggac 36925754  T
Q  263 ttgc 266  Q
    ||||    
T  36925755 ttgc 36925758  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 406
Target Start/End: Original strand, 9605567 - 9605833
Alignment:
Q  140 ggttgaatacccattgcgtgattgagccattcatcatagctacaaatagatgtctcagtgtggttcatcctattcataagcttctacagcctcactatcg 239  Q
    |||||||||| |||   ||| ||||||||||||||||||| ||||| |||  ||| |||||  |||| |||||| ||||| | ||| | || || |  ||    
T  9605567 ggttgaatactcatgcagtggttgagccattcatcatagcaacaaacagacatcttagtgttcttcaccctattaataagttgctagatccccatttccg 9605666  T
Q  240 tgacacaatgaatatcaatgcacttgctcggagttcattgatcagtggaggtggcattatagagcaagcatttttgccaggaccgtacgctgttgagatg 339  Q
    ||||||||| |||||||| | ||||||||| | | |  | || | ||  | ||| || || ||| || ||||||| || || ||| |  |||||||||||    
T  9605667 tgacacaataaatatcaacggacttgctcgaaatgctctaattaatgctgatggaataatcgaggaaacatttttacctgggccgaattctgttgagatg 9605766  T
Q  340 tcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 406  Q
    || || ||||  |||||| ||||||||||  |||| |||||| |||| |||||||||||||||||||    
T  9605767 tcatcagcagcatacaagaattgggttttcactgatcaagcattaccggctgatcttatcaagaggt 9605833  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 9605326 - 9605398
Alignment:
Q  70 acaatttggcaattggccaaggcgtatgtagttgtaaatgacgcctgctttcaccaactcatgagtcactggt 142  Q
    |||||||||| ||||||||||||  ||||| ||||||||||  | ||||  || ||||||||||| |||||||    
T  9605326 acaatttggctattggccaaggctcatgtaattgtaaatgattcatgctaccatcaactcatgagccactggt 9605398  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 42689192 - 42689270
Alignment:
Q  328 gctgttgagatgtcgtctgcagtttacaaggattgggtttttcctgaccaagcactacctgctgatcttatcaagaggt 406  Q
    ||||| || ||||| || || ||||||||| |||||||||| ||||| ||||| || || |||||||||||||||||||    
T  42689192 gctgtggaaatgtcttcagcggtttacaagaattgggttttccctgatcaagcccttccagctgatcttatcaagaggt 42689270  T

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