View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20498_high_11 (Length: 422)
Name: NF20498_high_11
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 41010915 - 41010522
Alignment:
| Q |
18 |
gtaatgaacatcttttccttagtgttcttagttttgctagctccacacataatgaaaaggtgtttgtttgtgtctgacatgagaaatttatcatccttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41010915 |
gtaatgaacatcttttccttagtgttcttagttttgctagctccacacataatgaaaaggtgtttgtttgtgtctgacatgagaaatttatcatccttta |
41010816 |
T |
|
| Q |
118 |
attttacttgagacattagttcatatattatactagcttttaagttctaacagctatgctgatatatatagttgattgatgtgttgattaagtgtcatgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41010815 |
attttacttgagacattagttcatatattatactagcttttaagttctaacagctatgctgatatatatagttgattcatgtgttgattaagtgtcatgt |
41010716 |
T |
|
| Q |
218 |
atgtagagtgccaatttgaatcaattaattcaggaacatgaggttcctgttctgttttctttgttctaaataaggaaagagttttgttttttattggcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41010715 |
atgtagagtgccaatttgaatcaattaattcaggaacatgaggctcctgttctgttttctttgttctaaataaggaaagagttttgttttttattggcat |
41010616 |
T |
|
| Q |
318 |
tttaatgtaggaaaatgagattttgacacacaaatgacgtcaaagttcgacaacaatttaaatagttaacacgttgtctatgtgagtgagtata |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
41010615 |
tttaatgtaggaaaatgagattttgacacacaaatgacgtcaaagttcgacaacaatttaaatagttaacacgttgtctatgtaagtgactata |
41010522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University