View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_high_12 (Length: 411)
Name: NF20498_high_12
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 3206424 - 3206111
Alignment:
| Q |
1 |
cccctcaatccacatcaaccattgattacatatcttatcttaatcttaattttaataaacaaacttgaagcatgttttagacctccaatccaatgtgtca |
100 |
Q |
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| T |
3206424 |
cccctcaatccacatcaaccattgattacatatcttatcttaatcttaattttaataaacaaacttgaagcatgttttagacctccaatccaatgtgtca |
3206325 |
T |
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| Q |
101 |
caattctaagctatcaatgccaaatcaacatttcttaaagtctcattttatcataaaaaatagtaactaggagtagaaacgcatgtaattcatatcattt |
200 |
Q |
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| T |
3206324 |
caattctaagctaccaatgcctaatcaacatttcttaaagtctaattttatcataaaaaatagtaactaggagtagaaacgcatgtaattcatatcattt |
3206225 |
T |
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| Q |
201 |
cacatttttaaattcatcaaattttcaatttatggtactaaaattaaataagttgatttccctccaagaaacatcataatccaaggcccaagttttggca |
300 |
Q |
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| T |
3206224 |
cacatttttaaattcatcaaattttcaatttatggaactaaaattaaataagttgatttccctc-----------------caaggcccaagttttgcca |
3206142 |
T |
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| Q |
301 |
aacccattaaatgaaagcaactaaacaggac |
331 |
Q |
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| T |
3206141 |
aacccattaaatgaaagcaactaaacaggac |
3206111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 392
Target Start/End: Complemental strand, 3206096 - 3206056
Alignment:
| Q |
352 |
tccacttttgaagagcagccagcgtttttgatggctttcca |
392 |
Q |
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| T |
3206096 |
tccacttttgaagagcagccagcgttttttatggctttcca |
3206056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 31189138 - 31189294
Alignment:
| Q |
115 |
caatgccaaatcaacatttcttaaagtctcattttatcataaaaaatagtaactaggagtagaaacgcatgtaattcatatcatttcac-atttttaaat |
213 |
Q |
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||||||||||||| || ||||| || ||||||||||||| |||| ||||| |||||| ||||| |||||||| |||| ||| || |||||||||| |
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| T |
31189138 |
caatgccaaatcatcaattcttgaaagctcattttatcatctaaaacagtaagtaggagcagaaaaacatgtaatccatactttttaacaatttttaaat |
31189237 |
T |
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| Q |
214 |
tcatcaaattttcaatttatggtactaaaatt-aaataagttgatttccctccaagaaa |
271 |
Q |
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| T |
31189238 |
t-atcaaa-tttcaatttatggaacaaaatttaaaacaagttgatttccctccaagaaa |
31189294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 2775800 - 2775852
Alignment:
| Q |
75 |
ttttagacctccaatccaatgtgtcacaattctaagctatcaatgccaaatca |
127 |
Q |
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| T |
2775800 |
ttttagacctccaatccaatgtgtcaaaattctaagcctccaatgccaaatca |
2775852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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