View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20498_high_22 (Length: 292)

Name: NF20498_high_22
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20498_high_22
NF20498_high_22
[»] chr3 (1 HSPs)
chr3 (105-275)||(36745622-36745792)
[»] chr8 (9 HSPs)
chr8 (99-250)||(6273640-6273791)
chr8 (138-229)||(6449899-6449990)
chr8 (135-229)||(6456366-6456460)
chr8 (99-243)||(6330988-6331132)
chr8 (95-250)||(6320519-6320674)
chr8 (104-250)||(6287891-6288037)
chr8 (173-250)||(6390068-6390145)
chr8 (179-217)||(6409353-6409391)
chr8 (165-226)||(6262455-6262516)
[»] chr5 (1 HSPs)
chr5 (162-230)||(9606050-9606118)
[»] chr1 (1 HSPs)
chr1 (154-202)||(47127110-47127158)
[»] chr2 (2 HSPs)
chr2 (139-197)||(42689380-42689438)
chr2 (165-229)||(42692378-42692442)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 105 - 275
Target Start/End: Original strand, 36745622 - 36745792
Alignment:
Q  105 agaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgcta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745622 agaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgcta 36745721  T
Q  205 ttaaggcatgggtgaaagactatgttagtttgtactacaagacagacgtggccattcaaagagatgctgag 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745722 ttaaggcatgggtgaaagactatgttagtttgtactacaagacagacgtggccattcaaagagatgctgag 36745792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 250
Target Start/End: Complemental strand, 6273791 - 6273640
Alignment:
Q  99 ttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatggg 198  Q
    |||| ||||||| |||||||| ||||| | ||| | || ||||| ||||||||  ||||| | |||||||||| ||||| ||||||||||||||||||||    
T  6273791 ttatctagaggagtggctgttaaggatccaagttccccacacggccttcgccttctgatagaggactacccttatgctgctgatggattagagatatggg 6273692  T
Q  199 atgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 250  Q
     || ||||||| |||||||  |||| ||||| | ||| ||||||||| ||||    
T  6273691 ctgttattaagtcatgggttgaagaatatgtgaatttctactacaagtcaga 6273640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 6449990 - 6449899
Alignment:
Q  138 cacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 229  Q
    ||||| ||||| || |||||| | |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||    
T  6449990 cacggccttcgacttgtgatagaggactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggtccaagactatgt 6449899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 6456460 - 6456366
Alignment:
Q  135 ccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 229  Q
    ||||| |||||||| || | | || |||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||    
T  6456460 ccccatggacttcgtcttgcgttagaagactacccttatgctgttgatggactagaaatatgggatgctattaaggcatgggttcaagactatgt 6456366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 6331132 - 6330988
Alignment:
Q  99 ttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatggg 198  Q
    |||| ||||||| |||||||| ||||| | | | | || || ||| |||||||  ||||| | |||||||||| ||||| ||||||| ||||||||||||    
T  6331132 ttatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagatatggg 6331033  T
Q  199 atgctattaaggcatgggtgaaagactatgttagtttgtactaca 243  Q
    ||||||| ||| |||||||  |||| ||||| ||||| |||||||    
T  6331032 atgctatcaagtcatgggttgaagaatatgtgagtttctactaca 6330988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 250
Target Start/End: Complemental strand, 6320674 - 6320519
Alignment:
Q  95 tgctttatttagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagata 194  Q
    |||| ||| ||||||| |||||||| ||||| | | | | || || ||| |||||||  ||||| | |||||||||| ||||| ||||||| ||||||||    
T  6320674 tgctatatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagaggactacccttatgctgctgatggactagagata 6320575  T
Q  195 tgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 250  Q
    ||||||||||| ||| |||||||  |||| ||||| | ||| ||||||||| ||||    
T  6320574 tgggatgctatcaagtcatgggttgaagaatatgtgaatttctactacaagtcaga 6320519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 250
Target Start/End: Complemental strand, 6288037 - 6287891
Alignment:
Q  104 tagaggaatggctgttcaggatgccagtgcaccccacggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgggatgct 203  Q
    ||||||| |||||||| ||||| | | | | || ||||| ||||||||  |||||||||| ||||||| ||||| |||||||||||||||||||   ||     
T  6288037 tagaggagtggctgttgaggatccaacttccccacacggccttcgccttctgataaaagattacccttatgctgctgatggattagagatatggacagca 6287938  T
Q  204 attaaggcatgggtgaaagactatgttagtttgtactacaagacaga 250  Q
    |||||| |||||||  |||| |||||   ||| ||||||||| ||||    
T  6287937 attaagtcatgggttgaagaatatgtgtatttctactacaagtcaga 6287891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 6390145 - 6390068
Alignment:
Q  173 tgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgttagtttgtactacaagacaga 250  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||  | || ||||| | ||| ||||||||| ||||    
T  6390145 tgctgttgatggactagagatatgggctgctattaagtcatgggttgatgaatatgtcaatttctactacaagtcaga 6390068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 6409391 - 6409353
Alignment:
Q  179 tgatggattagagatatgggatgctattaaggcatgggt 217  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  6409391 tgatggattagagatatgggctgctattaagtcatgggt 6409353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 6262516 - 6262455
Alignment:
Q  165 tacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagacta 226  Q
    ||||||| ||||||||||||| | || || ||||||||||||||| |||||||  |||||||    
T  6262516 tacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagacta 6262455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 9606050 - 9606118
Alignment:
Q  162 gactacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgtt 230  Q
    |||||||||| ||| ||||||||| | ||||||||||||||||||||| |||||||  |||||||||||    
T  9606050 gactacccttatgcagttgatggactcgagatatgggatgctattaagtcatgggtccaagactatgtt 9606118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 47127158 - 47127110
Alignment:
Q  154 tgataaaagactacccttttgctgttgatggattagagatatgggatgc 202  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||    
T  47127158 tgatagaagactacccttttgctgttgatggattggaaatatgggatgc 47127110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 42689380 - 42689438
Alignment:
Q  139 acggacttcgcctagtgataaaagactacccttttgctgttgatggattagagatatgg 197  Q
    |||||||||| ||  ||||| | |||||||||| |||||||||||||||||||||||||    
T  42689380 acggacttcgtcttctgatagaggactacccttatgctgttgatggattagagatatgg 42689438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 42692442 - 42692378
Alignment:
Q  165 tacccttttgctgttgatggattagagatatgggatgctattaaggcatgggtgaaagactatgt 229  Q
    ||||||| ||||  |||||||||||||||||||| ||| || ||| |||||||  ||||||||||    
T  42692442 tacccttatgctcatgatggattagagatatgggctgcaataaagacatgggttcaagactatgt 42692378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University