View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_high_4 (Length: 579)
Name: NF20498_high_4
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 7651777 - 7651570
Alignment:
| Q |
1 |
ccaccttttccagtgtcaatttgaatgttcttcatctggtttgccatgttgttatggttgttattgttgttgttctccgttggagcacaccaaagttctg |
100 |
Q |
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| T |
7651777 |
ccaccttttccagtgtcaatttgaatgttcttcatctggtttgccatgttgttatggttgttattgttgttgttctccgttggagcacaccaaagttctg |
7651678 |
T |
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| Q |
101 |
catgtttctttgattttgcaagcttcttaatgagaacatctgggtctatattcccagcaacaatcacctttccttgttcaatatatatctcaatagtata |
200 |
Q |
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| T |
7651677 |
catgtttctttgattttgcaagcttcttgatgagaacatctgggtctatattcccagcaacaatcacctttccttgttcaatatctatctcaatagtata |
7651578 |
T |
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| Q |
201 |
aacgcctg |
208 |
Q |
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||| |||| |
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| T |
7651577 |
aacccctg |
7651570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 406 - 565
Target Start/End: Complemental strand, 7651325 - 7651166
Alignment:
| Q |
406 |
aagagtgagagagaaaaaataaaagcttttcatgagtannnnnnncttgggctataaaaataataaaacaaatgtatgtaaatcaatggtggtaataata |
505 |
Q |
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| T |
7651325 |
aagagtgagagagaaaaaataaaagcttttcatgagtatttttttcttgggctataaaaataataaaacaaatgtatgtaaatcaatggtggtaataata |
7651226 |
T |
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| Q |
506 |
tattttatatttttctcttgatattaaagagnnnnnnnnagagtataaacgtgatgaaaa |
565 |
Q |
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| T |
7651225 |
tattttatatttttctcttgatattaaagagttttttttagagtataaacgtgatgaaaa |
7651166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 293 - 418
Target Start/End: Complemental strand, 7651473 - 7651346
Alignment:
| Q |
293 |
tggatctaatggtggtatgagttttgtgttatttttccctttcatataataaaagaatttttaaaataatattgagtatcaaagtgaatgaa--atgggg |
390 |
Q |
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| T |
7651473 |
tggatctaatggtggtatgagttttgtgttatttttccctttcatataataaaagaatttttaaaataatattgagtatcaaagtgaatgaaatatgggg |
7651374 |
T |
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| Q |
391 |
taaatacatattcctaagagtgagagag |
418 |
Q |
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| T |
7651373 |
taaatacatatttctaagagtgagagag |
7651346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 7657154 - 7656975
Alignment:
| Q |
1 |
ccaccttttccagtgtcaatttgaatgttcttcatctggtttgccatgttgttatggttgttattgttgttgttctccgttggagcacaccaaagttctg |
100 |
Q |
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|||||||||||| ||||||| || ||||||||||| || |||| |||||||| |||||||||||||||||||| || ||||||||| ||||||||||| |
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| T |
7657154 |
ccaccttttccattgtcaatatgcatgttcttcatttgatttggaatgttgttctggttgttattgttgttgtttgcctttggagcaccccaaagttctg |
7657055 |
T |
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| Q |
101 |
catgtttctttgattttgcaagcttcttaatgagaacatctgggtctatattcccagcaacaatcacctttccttgttca |
180 |
Q |
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|||||||| |||||||||||||||||| |||||||||| |||||| | ||| |||| ||| ||||||| ||||||||| |
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| T |
7657054 |
catgtttccctgattttgcaagcttcttgatgagaacatttgggtccacatttccagaaacggtcaccttcccttgttca |
7656975 |
T |
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