View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_high_5 (Length: 578)
Name: NF20498_high_5
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 12 - 560
Target Start/End: Complemental strand, 33378481 - 33377933
Alignment:
| Q |
12 |
tgagatgaagggaagcacattagggtttctcttcacatggttgagttgcaatccgacgaaaacacatgctagagttgtagatatcagagccatgataact |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33378481 |
tgagatgaagggaagcacattagggtttctcttcacatggttgagttgcaatccgacgaaaacacatgctagagttgtagatatcagagccatgataact |
33378382 |
T |
|
| Q |
112 |
tccatatccattctccaaacatttcttctcgcttcttgaatgtaatacgctaccgcagatacctctaaactgttgaagtaaagaggatcggattttgggc |
211 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33378381 |
tccatatccgttctccaaacatttcttctcacttcttgaatgtaatacgctaccgcagatacctctaaactgttgaagtaaagaggatcggattttgggc |
33378282 |
T |
|
| Q |
212 |
gcgtgctttcaatgcttcccttaatgtagcttctatcttttgtatctaaagaagggaactgaaatttcatcagaatctcacagtccacagaatttgctgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33378281 |
gcgtgctttcaatgcttcccttaatgtagcttctatcttttgtatctaaagaagggaactgaaatttcatcagaatctcacagtccaaagaatttgctgt |
33378182 |
T |
|
| Q |
312 |
tggtgttccattgtttgagacaaggtcacgacaaccaatcatacacaaggttccatctcttgcatcataaattccttctgccgaaatcttcaccgaataa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33378181 |
tggtgttccattgtttgagacaaggtcacgacaaccaatcatacacaaggttccatatcttgcatcataaattccttctgccgaaatcttcaccgaataa |
33378082 |
T |
|
| Q |
412 |
taagacatgttaaacaaggaattcttgtcagaaggcgaagaagacatcactgagaggctaatcttgtagctaatgttaaacaagctatcgttgttcaaga |
511 |
Q |
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| T |
33378081 |
taagacatgttaaacaaggaattcttgtcagaaggcgaagaagacatcgctgagaggctaatcttgtagctaatgttaaacaagctatcgttgttcaaga |
33377982 |
T |
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| Q |
512 |
ttccagcatcaaattcacttcttgagaaggaaacggaagatgtagatac |
560 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33377981 |
ttccagcatcaaattcacttcttgagatggaaacggaagatgtagatac |
33377933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 12 - 404
Target Start/End: Complemental strand, 33384622 - 33384227
Alignment:
| Q |
12 |
tgagatgaagggaagcacattagggtttctcttcacatggttgagttgcaatccgacgaaaacacatgctagagttgtagatatcagagccatgataact |
111 |
Q |
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||||||||||||||||||||||| || | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33384622 |
tgagatgaagggaagcacattagtgtgtttcttgacatggtatagttgcaatccgacgaaaacacatgctagagttgtagatatcagaaccatgataatc |
33384523 |
T |
|
| Q |
112 |
tccatatccattctccaaacatttcttctcgcttcttgaatgtaatacgctaccgcagatacctctaaactgttgaagtaaagaggatcggattttgggc |
211 |
Q |
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||||||||||||||||||||| | || ||||| || |||| || | ||| | ||||||||| |||||||||||| |||| |||||| | |
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| T |
33384522 |
tccatatccattctccaaacagctgttatcgctgtttccgagtaaattgcatatgaagaaagctctaaacttttgaagtaaagaagatctgatttttttc |
33384423 |
T |
|
| Q |
212 |
gcgtgctttcaatgcttcccttaa---tgtagcttctatcttttgtatctaaagaagggaactgaaatttcatcagaatctcacagtccacagaatttgc |
308 |
Q |
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|| ||||||| || || || |||| ||||||||| || | ||| ||| || || || |||||||| |||| ||||||||||| |||||||| || |
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| T |
33384422 |
gcatgctttcgatactccctttaatgttgtagcttccatttattgcatccaatgatggaaactgaaacttcaatagaatctcacaatccacagagccggc |
33384323 |
T |
|
| Q |
309 |
tgttggtgttccattgtttgagacaaggtcacgacaaccaatcatacacaaggttccatctcttgcatcataaattccttctgccgaaatcttcac |
404 |
Q |
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| ||||||||| |||||| ||| || || |||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||| |
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| T |
33384322 |
taacggtgttccagcctttgagttaagatcgcggcaaccaatcatacacagggttcctgtccttgcatcataaataccttctgctgaaatcttcac |
33384227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 26790691 - 26790811
Alignment:
| Q |
12 |
tgagatgaagggaagcacattagggtttctcttcacatggttgagttgcaatccgacgaaaacacatgctagagttgtagatatcagagccatgataact |
111 |
Q |
| |
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|||||||||||||||||||||||||| | |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26790691 |
tgagatgaagggaagcacattagggtgtttcttgacatggtatagttgcaggccgacgaaaacacatgctagagttgtagatatcagaaccatgataatc |
26790790 |
T |
|
| Q |
112 |
tccatatccattctccaaaca |
132 |
Q |
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||||||||| ||||||||||| |
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| T |
26790791 |
tccatatccgttctccaaaca |
26790811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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