View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_13 (Length: 391)
Name: NF20498_low_13
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_13 |
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| [»] scaffold0244 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 150 - 375
Target Start/End: Complemental strand, 37665620 - 37665391
Alignment:
| Q |
150 |
catgtaaattctctaaaattcgtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagtta |
249 |
Q |
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| T |
37665620 |
catgtaaattctctaaaattcgtagcattaccattgttcatgacattaaggataaactcatttggagtacttcttcaaatgattaatactcaactagtta |
37665521 |
T |
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| Q |
250 |
aggatatag----gtggttagatcgaatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatcta |
345 |
Q |
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| T |
37665520 |
aggatatagctaggtggttagatcgaatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatcta |
37665421 |
T |
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| Q |
346 |
agaaatttttgtttgtcggcgatgcatgct |
375 |
Q |
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| T |
37665420 |
agaaatttttgtttgtcggcgatgcatgct |
37665391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 354
Target Start/End: Original strand, 13451421 - 13451602
Alignment:
| Q |
171 |
gtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc- |
269 |
Q |
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||||||||||||||| |||||||| | ||||| ||| ||||||| | ||| | |||||| | | | |||| |||||| |||||||||| |||| ||| |
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| T |
13451421 |
gtagcattaccattgatcatgacaatgaggatagacttatttggattgcttatccaaatggtcagttctcaggtagttatggatataggtagttaaatca |
13451520 |
T |
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| Q |
270 |
gaatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttt |
354 |
Q |
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| T |
13451521 |
gaatctaac---ttaacaattagaacctgttatttgttggagttggattcagaggctatcggtttctaaaaatctaagacatttt |
13451602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 37665754 - 37665681
Alignment:
| Q |
14 |
atgaaaaaatggagaaatctttttatatattttnnnnnnnnnnttaagagtgataaatgaatatgttaatgacaag |
89 |
Q |
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| T |
37665754 |
atgaaaaaatggagaaatctttttatatattttaaaaaaaaaattaagagtgataaatga--atgttaatgacaag |
37665681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 167 - 375
Target Start/End: Complemental strand, 1260280 - 1260074
Alignment:
| Q |
167 |
attcgtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttag |
266 |
Q |
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| T |
1260280 |
attcgtagcattaccattgatcatgacaccgaagataaactcatttgaagtgcttctccaaatggtcaatactcagctagttatggatataggtggtttg |
1260181 |
T |
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| Q |
267 |
atc-gaatctaacgactcaacaaatagagccagttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggc |
365 |
Q |
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| T |
1260180 |
atcataatcta---actcaacaagtagagctagttaattgttggagttggatctggaggcttcaagtttctgaaaatctaagacatttttgttggctggt |
1260084 |
T |
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| Q |
366 |
gatgcatgct |
375 |
Q |
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| T |
1260083 |
gatgcatgct |
1260074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 14960 - 14852
Alignment:
| Q |
171 |
gtagcattaccattgttcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc- |
269 |
Q |
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||||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||| | |||||||| ||||||| |||||||||||||| |||| |
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| T |
14960 |
gtagcattaccattgatcatgacaccgaggataaactcatttggagtgcttctccaaatggtcaatactcatctagttatggatataggtggtttgatca |
14861 |
T |
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| Q |
270 |
gaatctaac |
278 |
Q |
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| T |
14860 |
gaatctaac |
14852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 373
Target Start/End: Complemental strand, 8905 - 8829
Alignment:
| Q |
297 |
agttatttgttggaggtagacttggaggctaccgatttctgaaaatctaagaaatttttgtttgtcggcgatgcatg |
373 |
Q |
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| T |
8905 |
agttaattgttggagttggatttggaggcttccagtttctgaaaatctaagacatttttgttggttggtgatgcatg |
8829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 53910603 - 53910688
Alignment:
| Q |
187 |
tcatgacattaaggattaactcatttggagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatcgaa |
272 |
Q |
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| T |
53910603 |
tcatgacattgaggatagactcatttggagtgcttctttagatggccaatactcaactagttattgatatatgtggttagatcgaa |
53910688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 358
Target Start/End: Complemental strand, 40699367 - 40699225
Alignment:
| Q |
214 |
gagtacttcttcaaatgattaatactcaactagttaaggatataggtggttagatc-gaatctaacgactcaacaaatagagccagttatttgttggagg |
312 |
Q |
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|||| ||||| |||||| | |||| ||| ||||||| | ||||||||||||||||| ||||||| ||||||||| |||||| | ||| ||||||||| |
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| T |
40699367 |
gagtgcttctccaaatggtcaatattcagctagttatgaatataggtggttagatcagaatcta---actcaacaagtagagctaattaattgttggagt |
40699271 |
T |
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| Q |
313 |
tagacttggaggctaccgatttctgaaaatctaagaaatttttgtt |
358 |
Q |
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| T |
40699270 |
tggacctggaggcttcaagtttctgaaaatctatggcatttttgtt |
40699225 |
T |
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