View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_14 (Length: 391)
Name: NF20498_low_14
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 375
Target Start/End: Complemental strand, 2839518 - 2839155
Alignment:
| Q |
12 |
aagaatggagacaagnnnnnnntcaatttccaaaaacgaacacacaaacccagtctatacatacaattaacataaaatatgaaagctatcgatataaatg |
111 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839518 |
aagaatggagacaagaaaaaaatcaatttccaaaaacgaacacacaaacccagtctatacatacaattaacataaaatatgaaagctatcgatataaatg |
2839419 |
T |
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| Q |
112 |
cgctaaactaatatgctaccaaaaccaataataatgatgcagtagtgcttaattagcaaattggaattgttgtaaatgcgctgactgccaaaattatgaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839418 |
cgctaaactaatatgctaccaaaaccaataataatgatgcagtagtgcttaattagcaaattggaattgttgtaaatgcgctgactgccaaaattatgaa |
2839319 |
T |
|
| Q |
212 |
gaagctgctgaggcgtataaacaaatacatcagctttgtggtgaagatgatatcaactaaggttagtcttttaaattttattgatctggatttggcatga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839318 |
gaagctgctgaggcgtataaacaaatacatcagctttgtggtgaagatgatatcaactaaggttagtcttttaaattttattgatctggatttggcatga |
2839219 |
T |
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| Q |
312 |
aaatgcattcaattttctatagatttcatgcgttgctagttttgtttgtttagttaatgattat |
375 |
Q |
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| T |
2839218 |
aaatgcattcaattttctatagatttcatgcgttgctagttttgtttgtttagttaatgattat |
2839155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 18297116 - 18297270
Alignment:
| Q |
34 |
tcaatttccaaaaacgaacacacaaacccagtctatacatacaattaacataaaatatgaaagctatcgatataaatgcgctaaactaatatgctaccaa |
133 |
Q |
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| T |
18297116 |
tcaatttccaaaaatgaacacacaaatccagtcaatacatacaatttacgtaaaatatgaaagctatcaatataaatgcgctaaactaatatgctaccaa |
18297215 |
T |
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| Q |
134 |
aacca------ataataatgatgcagtagtgcttaattagcaaattggaattgtt |
182 |
Q |
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||| | ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18297216 |
aacaaataattataataatgatgcaggagtgcttaattagcaaattggaattgtt |
18297270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 162 - 316
Target Start/End: Original strand, 11689539 - 11689689
Alignment:
| Q |
162 |
aattagcaaattggaattgttgtaaatgcgctgactgccaaaattatgaagaagctgctgaggcgtataaacaaatacatcagctttgtggtgaagatga |
261 |
Q |
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||||| ||||||||| ||| |||||||||||| |||||||||||||||||| || |||||| ||| ||||||||||||||||| || | | | |
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| T |
11689539 |
aattaccaaattggatttgatgtaaatgcgctaactgccaaaattatgaagt---tgttgaggcatatgaacaaatacatcagcttgatgcactaaaagc |
11689635 |
T |
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| Q |
262 |
tatcaactaaggttagtcttttaaattttattgatctggatttggcatgaaaatg |
316 |
Q |
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| T |
11689636 |
-agcagctaaggttagtcttttaaattttcttgatctggatttggtatgaaaatg |
11689689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 200 - 375
Target Start/End: Original strand, 30688225 - 30688407
Alignment:
| Q |
200 |
caaaattatgaagaagctgctgaggcgtataaacaaatacatcagctttgtggtgaagatgat-----------atcaactaaggttagtcttttaaatt |
288 |
Q |
| |
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||||||||| || ||||||||||||| ||| ||||||||||||| |||||| ||||||||||| | || |||||||||||||||| | |
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| T |
30688225 |
caaaattatcaaaaagctgctgaggcatatgaacaaatacatcaactttgtcgtgaagatgatgcactaaaagaagcagctaaggttagtctttt----t |
30688320 |
T |
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| Q |
289 |
ttattgatctggatttggcatgaaaatgcattcaattttctatagatttcatgcgttgctagttttgtttgtttagttaatgattat |
375 |
Q |
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| T |
30688321 |
cttttgagctggatttggtatgaaaatgcattcaattttctatagattttatgctttgctagttttgtttgtttagttaatgattat |
30688407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 28477866 - 28477813
Alignment:
| Q |
301 |
atttggcatgaaaatgcattcaattttctatagatttcatgcgttgctagtttt |
354 |
Q |
| |
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|||||| |||||||||| |||||||| ||||||||||||||| |||||| |||| |
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| T |
28477866 |
atttggtatgaaaatgccttcaatttgctatagatttcatgctttgctaatttt |
28477813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 28477979 - 28477919
Alignment:
| Q |
200 |
caaaattatgaagaagctgctgaggcgtataaacaaatacatcagctttgtggtgaagatg |
260 |
Q |
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||||||||| || ||||||||||||| ||| ||||| || |||| |||||| ||||||||| |
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| T |
28477979 |
caaaattatcaaaaagctgctgaggcatatgaacaagtatatcaactttgtcgtgaagatg |
28477919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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