View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20498_low_15 (Length: 388)

Name: NF20498_low_15
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20498_low_15
NF20498_low_15
[»] chr7 (3 HSPs)
chr7 (146-207)||(34997672-34997733)
chr7 (281-374)||(40261205-40261297)
chr7 (148-206)||(34367418-34367476)
[»] chr4 (3 HSPs)
chr4 (146-207)||(38320476-38320537)
chr4 (148-206)||(37141916-37141974)
chr4 (148-206)||(17979047-17979105)
[»] chr2 (3 HSPs)
chr2 (146-207)||(5505151-5505212)
chr2 (21-80)||(26021688-26021748)
chr2 (148-206)||(2992788-2992846)
[»] chr8 (1 HSPs)
chr8 (21-80)||(1488262-1488322)
[»] chr3 (1 HSPs)
chr3 (21-80)||(50306300-50306360)
[»] chr1 (1 HSPs)
chr1 (21-80)||(3788646-3788706)
[»] chr5 (1 HSPs)
chr5 (148-206)||(39949549-39949607)


Alignment Details
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 34997672 - 34997733
Alignment:
Q  146 gaaaaataatatagtgtgcacaacccataataaaatcgatactcctctccaatttaatggtc 207  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  34997672 gaaaaataatatagtgtgcacaacccatgataaaatcgatactcctctctaatctaatggtc 34997733  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 374
Target Start/End: Original strand, 40261205 - 40261297
Alignment:
Q  281 gttgaggattttgggctggcaaatataaattgtatctcttcacattggacagaaatactttcatcacgtgtaaataaaataaaggacataattg 374  Q
    |||||| ||||||||||   |||||| |||||||||||||||||||  |||||| ||||||||||| |||||||| ||||||||||| ||||||    
T  40261205 gttgagaattttgggctaagaaatatgaattgtatctcttcacattctacagaa-tactttcatcaggtgtaaatcaaataaaggacttaattg 40261297  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 34367476 - 34367418
Alignment:
Q  148 aaaataatatagtgtgcacaacccataataaaatcgatactcctctccaatttaatggt 206  Q
    ||||| |||||||||||||||||||| ||||||||  |||||||||| ||| |||||||    
T  34367476 aaaatgatatagtgtgcacaacccatgataaaatcagtactcctctctaatctaatggt 34367418  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 38320537 - 38320476
Alignment:
Q  146 gaaaaataatatagtgtgcacaacccataataaaatcgatactcctctccaatttaatggtc 207  Q
    ||||||||||||||||||||||||  || ||||||||| |||||||||| ||||||||||||    
T  38320537 gaaaaataatatagtgtgcacaacttatgataaaatcggtactcctctctaatttaatggtc 38320476  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 37141974 - 37141916
Alignment:
Q  148 aaaataatatagtgtgcacaacccataataaaatcgatactcctctccaatttaatggt 206  Q
    ||||| |||||||||||||||||||| ||||||||  |||||||||| |||||||||||    
T  37141974 aaaatgatatagtgtgcacaacccatgataaaatcagtactcctctctaatttaatggt 37141916  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 17979047 - 17979105
Alignment:
Q  148 aaaataatatagtgtgcacaacccataataaaatcgatactcctctccaatttaatggt 206  Q
    ||||| |||||||||||||||||||| ||||||||  |||||||||| ||| |||||||    
T  17979047 aaaatgatatagtgtgcacaacccatgataaaatcagtactcctctctaatctaatggt 17979105  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 5505151 - 5505212
Alignment:
Q  146 gaaaaataatatagtgtgcacaacccataataaaatcgatactcctctccaatttaatggtc 207  Q
    |||||||||||||||||||||||||||| || |||||| |||||||||| ||| ||||||||    
T  5505151 gaaaaataatatagtgtgcacaacccatgatgaaatcggtactcctctctaatctaatggtc 5505212  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 26021688 - 26021748
Alignment:
Q  21 atggtgaagatgaaaaggg-ttgtagtttcatggtggatgagatgttattgttgatggttc 80  Q
    |||||||||||||||| || ||||||||||||| ||||||||||| || ||||||||||||    
T  26021688 atggtgaagatgaaaatggattgtagtttcatgatggatgagatgctagtgttgatggttc 26021748  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 2992788 - 2992846
Alignment:
Q  148 aaaataatatagtgtgcacaacccataataaaatcgatactcctctccaatttaatggt 206  Q
    ||||| |||||||||||||||||||| ||||||||  |||||||||| ||| |||||||    
T  2992788 aaaatgatatagtgtgcacaacccatgataaaatcagtactcctctctaatctaatggt 2992846  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 1488262 - 1488322
Alignment:
Q  21 atggtgaagatgaaaaggg-ttgtagtttcatggtggatgagatgttattgttgatggttc 80  Q
    |||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||    
T  1488262 atggtgaagatgaaaatggattgtagtttcatggtggatgagatgctagtgttgatggttc 1488322  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 50306300 - 50306360
Alignment:
Q  21 atggtgaagatgaaaaggg-ttgtagtttcatggtggatgagatgttattgttgatggttc 80  Q
    |||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||    
T  50306300 atggtgaagatgaaaatggattgtagtttcatggtggatgagatgctagtgttgatggttc 50306360  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 3788706 - 3788646
Alignment:
Q  21 atggtgaagatgaaaaggg-ttgtagtttcatggtggatgagatgttattgttgatggttc 80  Q
    |||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||    
T  3788706 atggtgaagatgaaaatggattgtagtttcatggtggatgagatgctagtgttgatggttc 3788646  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 39949607 - 39949549
Alignment:
Q  148 aaaataatatagtgtgcacaacccataataaaatcgatactcctctccaatttaatggt 206  Q
    ||||| |||||||||||||||||||| ||||||||  |||||||||| ||| |||||||    
T  39949607 aaaatgatatagtgtgcacaacccatgataaaatcagtactcctctctaatctaatggt 39949549  T

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