View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_16 (Length: 361)
Name: NF20498_low_16
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 39391944 - 39391762
Alignment:
| Q |
144 |
gaattgaaggcccaatatagagcacaatccgcttagnnnnnnncgcaaaatccgtttaacgaatcatggcagtttagcgacctatgtggatgagttgtca |
243 |
Q |
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| T |
39391944 |
gaattaaaggcccaatatagagcacaatccgcttagaaaaaaacgcaaaatccgtttaacgaatcatgtcagtttagcgacctatgtggatgagttgtca |
39391845 |
T |
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| Q |
244 |
aaaacttcaagagaagaaatgcaatcagctaagcaagcaccaattcattttggagaaattagaattatatgcctcattcaatt |
326 |
Q |
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| T |
39391844 |
aaaacttcaagagaagaaatgcaataagctaagcaagcaccaattcattttggagaaattagaattatatgcctgattcaatt |
39391762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 39392289 - 39392174
Alignment:
| Q |
19 |
aaagactactaaattcattccctttcaaattcaccatgtacaaacatatcaaatagttaaaattcattgcctgcactccaaaccaacaagc----atatg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
39392289 |
aaagactactaaattcattccctttcaaattcaccatgtacaaacatatcaaatagttaaagttcattgcctgcactccaaaccaacaagcatatatatg |
39392190 |
T |
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| Q |
115 |
aagcaagcactatagg |
130 |
Q |
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| T |
39392189 |
aagcaagcactatagg |
39392174 |
T |
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