View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_17 (Length: 348)
Name: NF20498_low_17
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 38933663 - 38933332
Alignment:
| Q |
17 |
acctacgtcgcatcatcacccttgacatcctctcaacgcaacgtctcaactccttcgttggctcgcgaaggagtgagacgttgaaacttataataaaact |
116 |
Q |
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| T |
38933663 |
acctacgtcgcatcatcacccttgacatcctctcaacgcaacgtctcaactccttcgttggctcgcgaaggagtgagacgttgaaacttataataaaact |
38933564 |
T |
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| Q |
117 |
tgctaaagacacgagtgagaggttcactcgtgttgagttgaggacgaggctaaccgatatgacgtttgagattatgacaaaaatggttgctggtgatgcg |
216 |
Q |
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| T |
38933563 |
tgctaaagacacgagtgagaggttcactcgtgttgagttgaggacgaggctaaccgatatgacgtttgagattatgacaaaaatggttgctggtgatgcg |
38933464 |
T |
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| Q |
217 |
gaggaagggaagaagtttaaagagatgataaatgagatgatgccgttgtttggggcgagtaatatgggagattttgtgcctttacttaggttgtttgatt |
316 |
Q |
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| T |
38933463 |
gaggaagggaagaagtttaaagagatgataaatgagatgatgccgttgtttggggcgagtaatatgggagattttgtgcctttacttaggttgtttgatt |
38933364 |
T |
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| Q |
317 |
ttgatggtttggttaagaggatgaaggatatt |
348 |
Q |
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| T |
38933363 |
ttgatggtttggttaagaggatgaaggatatt |
38933332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 28 - 348
Target Start/End: Complemental strand, 12155820 - 12155500
Alignment:
| Q |
28 |
atcatcacccttgacatcctctcaacgcaacgtctcaactccttcgttggctcgcgaaggagtgagacgttgaaacttataataaaacttgctaaagaca |
127 |
Q |
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| T |
12155820 |
atcatcaccctcgacatcctctcaacgcaacgtctcaactccttcagagaaacacgaaggaaagggacgttgaagcttataacaaatctagtccgcgact |
12155721 |
T |
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| Q |
128 |
cgagtgagaggttcactcgtgttgagttgaggacgaggctaaccgatatgacgtttgagattatgacaaaaatggttgctggtgatgcggaggaagggaa |
227 |
Q |
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|| |||| |||| || || |||||| | |||||||||||||||||||||| |||||| | |||||| |||||||| ||||||||| | |||| || |
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| T |
12155720 |
cgtgtgatgggtttacacgagttgagctaaggacgaggctaaccgatatgatgtttgataatatgacggcaatggttgttggtgatgccgcggaatttaa |
12155621 |
T |
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| Q |
228 |
gaagtttaaagagatgataaatgagatgatgccgttgtttggggcgagtaatatgggagattttgtgcctttacttaggttgtttgattttgatggtttg |
327 |
Q |
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| T |
12155620 |
aaagtttaaagagatggtatcggagatgatgccgttgttcggggcgaataataagggagattttgttcctttacttaggttgtttgattttgatggtatg |
12155521 |
T |
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| Q |
328 |
gttaagaggatgaaggatatt |
348 |
Q |
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||||||| ||||||||||||| |
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| T |
12155520 |
gttaagaagatgaaggatatt |
12155500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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