View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_18 (Length: 347)
Name: NF20498_low_18
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 343
Target Start/End: Original strand, 41010146 - 41010481
Alignment:
| Q |
10 |
aagaatatatgtcagattacacattaatatgataaaaatttagcatattaggattcaaatgtgtaattaattttgcagcaccaagcatatacgtaagatt |
109 |
Q |
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| T |
41010146 |
aagaatatatatcagattacacattaatttgataaaaatttagcatattaggattcaaatgtgtaattaattttgcagcaccaagcatatacgtaagatt |
41010245 |
T |
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| Q |
110 |
acacattaactcattaaccattcaatcaaacacaattaaccacatttttcaagtgtctcaatatac---tttgaatcacattaaccatttaaattgtgat |
206 |
Q |
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| T |
41010246 |
acacattaactcattaaccattcaatcaaacacaattaaccacatttttcaagtgtctcaatatacatatttgaatcacattaaccatttaaattgtgat |
41010345 |
T |
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| Q |
207 |
taatcgtgttgagaaattacaagaacataattaacaatatatttgaacgtgttaactannnnnnnngtgaagtagactattagttaaaaattcaccttta |
306 |
Q |
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| T |
41010346 |
taattgtgttgaggaattacaagaacataattaaccatataatcgagcgtgttaactatttttttt-tgaagtagtctagtagttaaaaattcaccttta |
41010444 |
T |
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| Q |
307 |
tatgacgaataaatagagcgtccggaattcgaactct |
343 |
Q |
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| T |
41010445 |
tatgacgaataaatatagcgttcgaaattcgaactct |
41010481 |
T |
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