View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_19 (Length: 335)
Name: NF20498_low_19
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 580561 - 580863
Alignment:
| Q |
19 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580561 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
580660 |
T |
|
| Q |
119 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580661 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
580760 |
T |
|
| Q |
219 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggcagcaggggcattctcttacatttcct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580761 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggcagcaggggcattctcttacatttcct |
580860 |
T |
|
| Q |
319 |
ttg |
321 |
Q |
| |
|
||| |
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|
| T |
580861 |
ttg |
580863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 591866 - 591564
Alignment:
| Q |
19 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591866 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
591767 |
T |
|
| Q |
119 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591766 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
591667 |
T |
|
| Q |
219 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggcagcaggggcattctcttacatttcct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
591666 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggcagcaggggcattctcttacatttcct |
591567 |
T |
|
| Q |
319 |
ttg |
321 |
Q |
| |
|
||| |
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|
| T |
591566 |
ttg |
591564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 84 - 246
Target Start/End: Original strand, 37434363 - 37434527
Alignment:
| Q |
84 |
ctgagactccaccctccactaattatgttgctgagaagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtc |
183 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||||| ||||||| | ||||||||||||||||||||||| |||||| |||||| ||||||||||||| |
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| T |
37434363 |
ctgagactccaccctccattgattatgccgctgagaaactcacacggagatttcagcgtcacaacaagagaagggaaaaagtatggaattcccaagggtc |
37434462 |
T |
|
| Q |
184 |
atat--agttgctacatcccctgcatttgcaaacaggttaccacacattttcaatgaccctgata |
246 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||| |
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|
| T |
37434463 |
atatagagttgctacatcccttgcatttgcaaacaggttacctcatattttcaatgatcctgata |
37434527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 37434541 - 37434588
Alignment:
| Q |
274 |
ggagggaagaagacaaggcagcaggggcattctcttacatttcctttg |
321 |
Q |
| |
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|||||||| ||||||||| |||| ||||||||||||||||||||||| |
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| T |
37434541 |
ggagggaaaaagacaaggtggcagaggcattctcttacatttcctttg |
37434588 |
T |
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