View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_2 (Length: 615)
Name: NF20498_low_2
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 40483777 - 40483193
Alignment:
| Q |
18 |
aggagaatgtagaaaattccgcgtacctgatcaatgttgccaggtccaatcaatacaagtgctacaccagatgcgtccattatatcctgttggtagagca |
117 |
Q |
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| T |
40483777 |
aggagaatgcagaaaattccgcgtacctgatcaatgttgccaggtccaatcaatacaagtgctacaccagatgcgtccattatatcctgttggtagagca |
40483678 |
T |
|
| Q |
118 |
aaatcaaaacaagagaacgtaaagtgcagcttacaacataaggaagcaaaacaaatagtaaacaaaaagggacaaaaaccatgagtcatgtttggtccca |
217 |
Q |
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| T |
40483677 |
aaatcaaaacaagagaacgtaaagtgcagcttacaacataaggaagcaaaacaaatactaaacaaaaagggacaaaaaccatgagtcatgtttggtccca |
40483578 |
T |
|
| Q |
218 |
cattttgaatagagatgcatatcttgttgatactataaactcttaacaaccagaattccagaaccaaaatcgtctcctaagaagactttaagtactgaaa |
317 |
Q |
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| T |
40483577 |
cattttgaatagagatgcatatcttgttgatactataaactcttaacaagcagaattccagaatcaaaatcgtctcctaagaagactttaagtactgaaa |
40483478 |
T |
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| Q |
318 |
gcaacgttcaaatgtttttccaagaaaaacagcaatcttaatatgaggttgaagctagcaagaatcaaatgaaatttcagaagacagtataagaagagca |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483477 |
gcaacgttcaaatgtttttccaagaaaaacagcaatcttaatatgagttagaagctagcaagaatcaaatgaaatttcagaagacagtataagaagagca |
40483378 |
T |
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| Q |
418 |
gaaaacattaccttcttggatacaagataatcagctcttttgcggcaaagcacacacctgcaacatatgcaattgttaatttgttacacaactcaatttc |
517 |
Q |
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| T |
40483377 |
gaaaacaataccttcttggatgcaagataatcagctcttttgcggcaaagcacacacctgcaacatatgcaattgttagtttgttacacaactcaatttc |
40483278 |
T |
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| Q |
518 |
aggagctaagtgcatgtttggattgatagtgaattttgtcaaatcacggtgacaccatgatttcattgaagcttcaaagtataat |
602 |
Q |
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| T |
40483277 |
aggagctaagtgcatgtttggattgatagtgaattttgtcaaatcacggtgacaccatgatttcattgaagcttcaaagtataat |
40483193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 584
Target Start/End: Complemental strand, 22533761 - 22533728
Alignment:
| Q |
551 |
ttttgtcaaatcacggtgacaccatgatttcatt |
584 |
Q |
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| T |
22533761 |
ttttgtcaaatcacggtgagaccatgatttcatt |
22533728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 17647782 - 17647738
Alignment:
| Q |
46 |
gatcaatgttgccaggtccaatcaatacaagtgctacaccagatg |
90 |
Q |
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| T |
17647782 |
gatcaatgtttccaagtccaatcaatacaagtgccacactagatg |
17647738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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