View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_27 (Length: 279)
Name: NF20498_low_27
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 111 - 270
Target Start/End: Original strand, 43077156 - 43077315
Alignment:
| Q |
111 |
gaatttggagaaagtgaggtttgaagtatttgaaagaggagtgaaaaatggtagctagagagtggtttttgttaggaaaattaagaaggtgagaaatggg |
210 |
Q |
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| T |
43077156 |
gaatttggagaaagtgaggtttgaagtatttgagagaggagtgaaaaatggtagctagagagtggtttttgttaggaaaattaagaaggtggaaaatggg |
43077255 |
T |
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| Q |
211 |
ttggaagtttatcgctttcaaggtcttattgtttatttagaaataatagtgatgatgatg |
270 |
Q |
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| T |
43077256 |
ttggaagtttatcgctttcaaggtgttatagtttatttagaaataatagtgatgatgatg |
43077315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 111 - 270
Target Start/End: Original strand, 43091329 - 43091488
Alignment:
| Q |
111 |
gaatttggagaaagtgaggtttgaagtatttgaaagaggagtgaaaaatggtagctagagagtggtttttgttaggaaaattaagaaggtgagaaatggg |
210 |
Q |
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| T |
43091329 |
gaatttggagagagtgaggtttgaagtatttgagagaggagtgaaaaatggttgctagagagtggtttttgttaggaaaattaagaaggtgggaaatggg |
43091428 |
T |
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| Q |
211 |
ttggaagtttatcgctttcaaggtcttattgtttatttagaaataatagtgatgatgatg |
270 |
Q |
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| T |
43091429 |
ttggaagtttatcgctttcaaggtgttatagtttatttagaaataatagtgatgatgatg |
43091488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 111 - 270
Target Start/End: Original strand, 43092250 - 43092408
Alignment:
| Q |
111 |
gaatttggagaaagtgaggtttgaagtatttgaaagaggagtgaaaaatggtagctagagagtggtttttgttaggaaaattaagaaggtgagaaatggg |
210 |
Q |
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| T |
43092250 |
gaatttggaaaaagtaaggtttgaagtatttgagagaggagtgaaaaatggtagctagagagtgatttttgttaggaaaattaagaaggtgggaaatggg |
43092349 |
T |
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| Q |
211 |
ttggaagtttatcgctttcaaggtcttattgtttatttagaaataatagtgatgatgatg |
270 |
Q |
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| T |
43092350 |
ttggaagtttatccttttcaa-atattatagtttatttagaaataatagtgatgatgatg |
43092408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 43077055 - 43077100
Alignment:
| Q |
7 |
gtttgtgtttctttcctttgtggtggttgcactcttttaccgacat |
52 |
Q |
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| T |
43077055 |
gtttgtgtttctttcctttgtggtggttgcactcttttaccgacat |
43077100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 43092158 - 43092203
Alignment:
| Q |
7 |
gtttgtgtttctttcctttgtggtggttgcactcttttaccgacat |
52 |
Q |
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| T |
43092158 |
gtttgtgtttctttcctttgtggtggttgcactcttttaccgacat |
43092203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 43091243 - 43091288
Alignment:
| Q |
7 |
gtttgtgtttctttcctttgtggtggttgcactcttttaccgacat |
52 |
Q |
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| T |
43091243 |
gtttgtgtttgtttcctttgtggtgattgcactcttttaccgacat |
43091288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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