View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20498_low_3 (Length: 605)

Name: NF20498_low_3
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20498_low_3
NF20498_low_3
[»] chr6 (11 HSPs)
chr6 (13-591)||(29408042-29408622)
chr6 (504-591)||(24797452-24797539)
chr6 (505-589)||(9975033-9975117)
chr6 (67-267)||(29425621-29425821)
chr6 (102-266)||(29456102-29456266)
chr6 (537-591)||(22020534-22020588)
chr6 (537-591)||(22055031-22055085)
chr6 (358-478)||(29425231-29425351)
chr6 (514-557)||(17115193-17115236)
chr6 (508-589)||(10345978-10346059)
chr6 (527-557)||(17124687-17124717)
[»] chr1 (11 HSPs)
chr1 (488-591)||(25670734-25670838)
chr1 (490-589)||(698791-698891)
chr1 (490-591)||(45925532-45925634)
chr1 (491-591)||(3483079-3483180)
chr1 (517-591)||(44958300-44958374)
chr1 (508-591)||(43492112-43492195)
chr1 (514-592)||(28188660-28188737)
chr1 (508-589)||(5224865-5224946)
chr1 (491-591)||(49003689-49003789)
chr1 (530-589)||(30494099-30494158)
chr1 (507-589)||(31822429-31822511)
[»] chr5 (11 HSPs)
chr5 (505-591)||(23129381-23129467)
chr5 (505-589)||(27146913-27146997)
chr5 (481-580)||(591180-591280)
chr5 (506-589)||(40872281-40872364)
chr5 (518-589)||(40458979-40459050)
chr5 (515-589)||(41520706-41520780)
chr5 (504-580)||(42265486-42265562)
chr5 (516-589)||(13978625-13978697)
chr5 (537-589)||(8415731-8415783)
chr5 (521-589)||(39046976-39047044)
chr5 (517-569)||(1820303-1820356)
[»] chr7 (8 HSPs)
chr7 (504-589)||(5248613-5248698)
chr7 (488-591)||(26803982-26804086)
chr7 (504-591)||(26402762-26402849)
chr7 (516-591)||(47405222-47405297)
chr7 (517-591)||(17883306-17883380)
chr7 (516-580)||(41514283-41514347)
chr7 (528-580)||(33899740-33899792)
chr7 (556-589)||(39960413-39960446)
[»] chr8 (8 HSPs)
chr8 (490-588)||(33650050-33650149)
chr8 (492-591)||(44254095-44254194)
chr8 (521-591)||(34336470-34336540)
chr8 (527-591)||(15271057-15271121)
chr8 (516-591)||(42704344-42704419)
chr8 (527-592)||(9774785-9774850)
chr8 (515-589)||(38236248-38236322)
chr8 (528-580)||(36907850-36907902)
[»] chr2 (9 HSPs)
chr2 (505-591)||(27501716-27501802)
chr2 (516-591)||(18375101-18375176)
chr2 (203-254)||(42154698-42154749)
chr2 (207-250)||(42164856-42164899)
chr2 (537-591)||(44330642-44330696)
chr2 (537-591)||(44365416-44365470)
chr2 (207-266)||(42292497-42292556)
chr2 (552-591)||(32493101-32493140)
chr2 (207-260)||(18805805-18805858)
[»] chr4 (29 HSPs)
chr4 (505-589)||(24753969-24754053)
chr4 (527-591)||(30161350-30161414)
chr4 (517-580)||(5047254-5047317)
chr4 (514-589)||(54495522-54495597)
chr4 (518-591)||(20180217-20180290)
chr4 (527-592)||(46088519-46088584)
chr4 (492-592)||(10042884-10042985)
chr4 (516-591)||(21988454-21988530)
chr4 (510-589)||(46521545-46521624)
chr4 (362-468)||(25044878-25044984)
chr4 (536-586)||(23135445-23135495)
chr4 (514-591)||(5091833-5091909)
chr4 (527-591)||(28695805-28695869)
chr4 (366-461)||(25002232-25002327)
chr4 (509-580)||(25751686-25751757)
chr4 (521-591)||(33266816-33266887)
chr4 (490-555)||(23135379-23135445)
chr4 (362-476)||(25016026-25016140)
chr4 (225-267)||(25044578-25044620)
chr4 (544-591)||(49360083-49360130)
chr4 (225-267)||(24984510-24984552)
chr4 (552-589)||(48079293-48079330)
chr4 (551-591)||(49587805-49587845)
chr4 (516-591)||(20787432-20787507)
chr4 (537-580)||(34124531-34124574)
chr4 (487-580)||(20022240-20022334)
chr4 (551-591)||(20176591-20176631)
chr4 (207-267)||(25167402-25167462)
chr4 (528-580)||(53261608-53261660)
[»] chr3 (8 HSPs)
chr3 (517-590)||(53605694-53605767)
chr3 (517-591)||(53641667-53641741)
chr3 (514-591)||(11465615-11465692)
chr3 (539-591)||(52299081-52299133)
chr3 (514-589)||(4275197-4275272)
chr3 (514-569)||(30364042-30364097)
chr3 (516-589)||(32734722-32734795)
chr3 (555-592)||(52380856-52380893)
[»] scaffold0018 (2 HSPs)
scaffold0018 (537-592)||(48817-48872)
scaffold0018 (504-540)||(49015-49051)


Alignment Details
Target: chr6 (Bit Score: 489; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 13 - 591
Target Start/End: Complemental strand, 29408622 - 29408042
Alignment:
Q  13 aatattgctcattgcaatcatatttaagccacacatcattgatgaagttgaccatcttagcgcaaatcaccatagctaacttttttcttttgtaggaaat 112  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29408622 aatattgctcattgcaatcatatttaagccacacatcattaatgaagttgaccatcttagcgcaaatcaccatagctaacttttttcttttgtaggaaat 29408523  T
Q  113 ttctaaaccatatggctgacatttttggatatcttttgagaccatttttataatctacaaagtttattccagtcctcactctatagcctaatgtccattc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29408522 ttctaaaccatatggctgacatttttggatatcttttgagaccatttttataatctacaaagtttattccagtcctcactctatagcctaatgtccattc 29408423  T
Q  213 gaaattgtcgagcaatgaccatgcaaaatatccttttacattcacaccatccctgaaaaattcgaagagtgaaaaaatgttaagcatgccttacaattca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29408422 gaaattgtcgagcaatgaccatgcaaaatatccttttacattcacaccatccctgaaaaattcaaagagtgaaaaaatgttaagcatgccttacaattca 29408323  T
Q  313 tataaacaatagaataactnnnnnnnntattcttttacttcatgtcacatacttgattgcagatttaagataatatagatgattataaaagtaatcaatc 412  Q
    |||||||||||||||||||         | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29408322 tataaacaatagaataactaaaaaaaaaaatcttttacttcatgtcacatacttgattgcagatttaagataatatagatgattataaaagtaatcaatc 29408223  T
Q  413 ctggctgtatctgcaagggcttcttcaagtgagagtgttggatcattgagctcatctatacctatacataatttaatgggaaatgttaac-ggtgccctt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  29408222 ctggctgtatctgcaagggcttcttcaagtgagagtgttggatcattgagctcatctatacctatacataatttaatgggaaatgttaacaagtgccctt 29408123  T
Q  512 aaggcattgttta-ggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
       | |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||    
T  29408122 ggagtattgtttagggaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattagaaattggagtttttga 29408042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 504 - 591
Target Start/End: Complemental strand, 24797539 - 24797452
Alignment:
Q  504 gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  24797539 gtgcccttaggacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatacattggaaattagagtttttga 24797452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 505 - 589
Target Start/End: Original strand, 9975033 - 9975117
Alignment:
Q  505 tgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    |||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||    
T  9975033 tgcctttagggcattgtttagtaactttaaatagtaaatttttgttaaagtttatgaaatcaatatattagaaatttgagttttt 9975117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 267
Target Start/End: Complemental strand, 29425821 - 29425621
Alignment:
Q  67 tcttagcgcaaatcaccatagctaacttttttcttttgtaggaaatttctaaaccatatggctgacatttttggatatcttttgagaccatttttataat 166  Q
    ||||||||  ||||||||||   |||| |||| | |||||| |||||  | |||||||  |||||||||||||||||||||||||| ||||  || ||||    
T  29425821 tcttagcgtgaatcaccatatgcaactattttatgttgtagaaaattcttgaaccatacagctgacatttttggatatcttttgaggccatcattgtaat 29425722  T
Q  167 ctacaaagtttattccagtcctcactctatagcctaatgtccattcgaaattgtcgagcaatgaccatgcaaaatatccttttacattcacaccatccct 266  Q
    |||  |||| |||||||  ||||    | ||||||||   |||||| || || || |||||||||||||||||||| |||||||||||||||||||||||    
T  29425721 ctatgaagtatattccaaacctcgaagtgtagcctaaaccccattcaaagttatcaagcaatgaccatgcaaaatacccttttacattcacaccatccct 29425622  T
Q  267 g 267  Q
    |    
T  29425621 g 29425621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 266
Target Start/End: Original strand, 29456102 - 29456266
Alignment:
Q  102 ttgtaggaaatttctaaaccatatggctgacatttttggatatcttttgagaccatttttataatctacaaagtttattccagtcctcactctatagcct 201  Q
    |||||| |||||  ||||||| || || ||||||||||||||||||||||  ||||| || ||||||||||||| |||||||  |||||   | |||||     
T  29456102 ttgtagaaaattcttaaaccagattgcagacatttttggatatcttttgatgccattattgtaatctacaaagtatattccaaacctcatggtgtagcca 29456201  T
Q  202 aatgtccattcgaaattgtcgagcaatgaccatgcaaaatatccttttacattcacaccatccct 266  Q
       | ||||||||| | |||||  ||||||||||||||||||||||| || ||  ||||||||||    
T  29456202 ttagcccattcgaagtcgtcgatgaatgaccatgcaaaatatcctttcacgttagcaccatccct 29456266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 537 - 591
Target Start/End: Original strand, 22020534 - 22020588
Alignment:
Q  537 agtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||    
T  22020534 agtaagtttttatcaaaatttatgaaatcaatgcattggaaattggagtttttga 22020588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 537 - 591
Target Start/End: Original strand, 22055031 - 22055085
Alignment:
Q  537 agtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||    
T  22055031 agtaagtttttatcaaaatttatgaaatcaatgcattggaaattggagtttttga 22055085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 478
Target Start/End: Complemental strand, 29425351 - 29425231
Alignment:
Q  358 cacatacttgattgcagatttaagataatatagatgattataaaagtaatcaatcctggctgtatctgcaagggcttcttcaagtgagagtgttggatca 457  Q
    ||||||||| ||||||| || |||||| || ||||| | |||| |||||||||||||   ||||||| |||||||||  ||||| |  ||||||||||||    
T  29425351 cacatactttattgcagtttgaagatagtagagatggtcataatagtaatcaatcctttgtgtatcttcaagggctttctcaagaggaagtgttggatca 29425252  T
Q  458 ttgagctcatctatacctata 478  Q
    || |  ||||| |||||||||    
T  29425251 ttaaagtcatccatacctata 29425231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 557
Target Start/End: Complemental strand, 17115236 - 17115193
Alignment:
Q  514 ggcattgtttaggaactttaaatagtaagtttttgttaaagttt 557  Q
    |||||||||||| ||| |||||||||||||||||||||||||||    
T  17115236 ggcattgtttagtaacattaaatagtaagtttttgttaaagttt 17115193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 589
Target Start/End: Original strand, 10345978 - 10346059
Alignment:
Q  508 ccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||| |||||||||||| ||  |||| |||||| ||||||||| | |||||| ||||||||||||| |||||  |||||||    
T  10345978 ccttagggcattgtttagtaatcttaattagtaaatttttgttagaatttatgtaatcaatgcattgaaaattgaagttttt 10346059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 557
Target Start/End: Complemental strand, 17124717 - 17124687
Alignment:
Q  527 aactttaaatagtaagtttttgttaaagttt 557  Q
    |||||||||||||||||||||||||||||||    
T  17124717 aactttaaatagtaagtttttgttaaagttt 17124687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 488 - 591
Target Start/End: Original strand, 25670734 - 25670838
Alignment:
Q  488 atgggaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtt 586  Q
    |||||||||||||||  ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  25670734 atgggaaatgttaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattgaaaattggagtt 25670833  T
Q  587 tttga 591  Q
    |||||    
T  25670834 tttga 25670838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 490 - 589
Target Start/End: Original strand, 698791 - 698891
Alignment:
Q  490 gggaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttt 588  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  698791 gggaaatgttaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattggaaatttgagtttt 698890  T
Q  589 t 589  Q
    |    
T  698891 t 698891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 490 - 591
Target Start/End: Complemental strand, 45925634 - 45925532
Alignment:
Q  490 gggaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttt 588  Q
    |||||||||||||| |||  |||||  |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  45925634 gggaaatgttaacgagtgttcttaaaacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgtattggaaatttgaatttt 45925535  T
Q  589 tga 591  Q
    |||    
T  45925534 tga 45925532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 491 - 591
Target Start/End: Complemental strand, 3483180 - 3483079
Alignment:
Q  491 ggaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||||||||||  || |||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||    
T  3483180 ggaaatgttaacaagtacccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcgatgcattgaaaattggagttttt 3483081  T
Q  590 ga 591  Q
    ||    
T  3483080 ga 3483079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 517 - 591
Target Start/End: Original strand, 44958300 - 44958374
Alignment:
Q  517 attgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  44958300 attgtttagtaactttaaatagtaaatttttgttaaagtttatgaaatcaatgcattgaaaattggagtttttga 44958374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 508 - 591
Target Start/End: Original strand, 43492112 - 43492195
Alignment:
Q  508 ccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||| ||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  43492112 ccttagggcattgcttagtaactttaaatagtaaatttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttga 43492195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 514 - 592
Target Start/End: Complemental strand, 28188737 - 28188660
Alignment:
Q  514 ggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttgat 592  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  28188737 ggcattgtttaataactttaaatagtaagtttttgttaaa-tttatgaaatcaatgcattggaaattgaagtttttgat 28188660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 508 - 589
Target Start/End: Original strand, 5224865 - 5224946
Alignment:
Q  508 ccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||| || ||||||||  || |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  5224865 ccttagggtattgtttaataattttaaatagtaagtttttgttaaagtttataaaatcaatgcattgcaaatttgagttttt 5224946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 491 - 591
Target Start/End: Complemental strand, 49003789 - 49003689
Alignment:
Q  491 ggaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||||||||||  ||||||||| |||||||||||  ||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||| ||||||||    
T  49003789 ggaaatgttaacaagtgcccttatggcattgtttaataactttaaatagtaaatttttgtcaaagtttatgaaat-aatacattggaaattagagttttt 49003691  T
Q  590 ga 591  Q
    ||    
T  49003690 ga 49003689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 530 - 589
Target Start/End: Complemental strand, 30494158 - 30494099
Alignment:
Q  530 tttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||    
T  30494158 tttaaatagtaagtttttgttaaagattatgaaatcaatgtattggaaattaaagttttt 30494099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 507 - 589
Target Start/End: Complemental strand, 31822511 - 31822429
Alignment:
Q  507 cccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    |||||| | |||||||||| ||||||| |||||||| |||||| ||||||||| |||||||||||||  ||||| ||||||||    
T  31822511 cccttacgacattgtttagtaactttagatagtaagcttttgtcaaagtttataaaatcaatgcattaaaaattggagttttt 31822429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 505 - 591
Target Start/End: Complemental strand, 23129467 - 23129381
Alignment:
Q  505 tgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  23129467 tgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattggagtttttga 23129381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 505 - 589
Target Start/End: Complemental strand, 27146997 - 27146913
Alignment:
Q  505 tgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    |||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  27146997 tgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattagagttttt 27146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 481 - 580
Target Start/End: Original strand, 591180 - 591280
Alignment:
Q  481 taatttaatgggaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaat 579  Q
    ||||| || |||||||||||||  |||| |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  591180 taattaaaagggaaatgttaacaagtgctcttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaat 591279  T
Q  580 t 580  Q
    |    
T  591280 t 591280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 506 - 589
Target Start/End: Complemental strand, 40872364 - 40872281
Alignment:
Q  506 gcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||    
T  40872364 gcccttagggcattgtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattggaaattggagttttt 40872281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 518 - 589
Target Start/End: Complemental strand, 40459050 - 40458979
Alignment:
Q  518 ttgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    |||||||  ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  40459050 ttgtttaataactttaaagagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattggagttttt 40458979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 515 - 589
Target Start/End: Complemental strand, 41520780 - 41520706
Alignment:
Q  515 gcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||||||||  ||||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||||    
T  41520780 gcattgtttaataactttaaatagtaagtttttatcaaagtttataaaatcaatgcattggaaattggagttttt 41520706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 504 - 580
Target Start/End: Complemental strand, 42265562 - 42265486
Alignment:
Q  504 gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatt 580  Q
    ||||||||| | |||||||||| ||||||| |||||||||||||||  ||||||||||||||||||||||| |||||    
T  42265562 gtgcccttaggacattgtttagtaactttatatagtaagtttttgtctaagtttatgaaatcaatgcattgaaaatt 42265486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 516 - 589
Target Start/End: Original strand, 13978625 - 13978697
Alignment:
Q  516 cattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    |||||||||  || ||||||||||||||||| || ||||||||||||||||||||||||||||||  |||||||    
T  13978625 cattgtttaataattttaaatagtaagtttt-gtcaaagtttatgaaatcaatgcattggaaattgaagttttt 13978697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 537 - 589
Target Start/End: Complemental strand, 8415783 - 8415731
Alignment:
Q  537 agtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||  |||||||    
T  8415783 agtaagtttttgtcaaagtttatgaaatcaatgtattggaaattgaagttttt 8415731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 521 - 589
Target Start/End: Complemental strand, 39047044 - 39046976
Alignment:
Q  521 tttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||| ||||||||||||| | ||||| | |||||||||||||||||||||||| |||||  |||||||    
T  39047044 tttagtaactttaaatagttaatttttctcaaagtttatgaaatcaatgcattgaaaattaaagttttt 39046976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 569
Target Start/End: Complemental strand, 1820356 - 1820303
Alignment:
Q  517 attgtttaggaactttaaatagtaa-gtttttgttaaagtttatgaaatcaatg 569  Q
    ||||||||| |||||||||||||||  |||||||||||||||| | ||||||||    
T  1820356 attgtttagtaactttaaatagtaatttttttgttaaagtttacgtaatcaatg 1820303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 504 - 589
Target Start/End: Original strand, 5248613 - 5248698
Alignment:
Q  504 gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  5248613 gtgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattggagttttt 5248698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 488 - 591
Target Start/End: Original strand, 26803982 - 26804086
Alignment:
Q  488 atgggaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtt 586  Q
    |||||||||||||||  ||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  ||||    
T  26803982 atgggaaatgttaacaagtgcccttagggcattgtttaataactttaaatagtaagtttttgtcaaagtttataaaatcaatgcattggaaattgaagtt 26804081  T
Q  587 tttga 591  Q
    |||||    
T  26804082 tttga 26804086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 504 - 591
Target Start/End: Original strand, 26402762 - 26402849
Alignment:
Q  504 gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||  |||||||||    
T  26402762 gtgcccttaaggcattgtttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgtattgaaaattgaagtttttga 26402849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 516 - 591
Target Start/End: Original strand, 47405222 - 47405297
Alignment:
Q  516 cattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  |||||||||    
T  47405222 cattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattagaaattgaagtttttga 47405297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 517 - 591
Target Start/End: Original strand, 17883306 - 17883380
Alignment:
Q  517 attgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||  |||||||||    
T  17883306 attgtttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcgttggaaattaaagtttttga 17883380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 516 - 580
Target Start/End: Original strand, 41514283 - 41514347
Alignment:
Q  516 cattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatt 580  Q
    |||||||||| |||||||||||||||||||| || ||||||||||||||||||| |||| |||||    
T  41514283 cattgtttagtaactttaaatagtaagttttagtcaaagtttatgaaatcaatgtattgaaaatt 41514347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 33899740 - 33899792
Alignment:
Q  528 actttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatt 580  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||| |||||    
T  33899740 actttaaatattaagtttttgttaaaatttatgaaatcaatacattgaaaatt 33899792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 589
Target Start/End: Original strand, 39960413 - 39960446
Alignment:
Q  556 ttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||||||||||||||||||||||| ||||||||    
T  39960413 ttatgaaatcaatgcattggaaattggagttttt 39960446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 490 - 588
Target Start/End: Complemental strand, 33650149 - 33650050
Alignment:
Q  490 gggaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttt 588  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||||||    
T  33650149 gggaaatgttaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaaatgtatgaaatcaatgcattggaaattagagtttt 33650050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 492 - 591
Target Start/End: Original strand, 44254095 - 44254194
Alignment:
Q  492 gaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttg 590  Q
    |||||||||||  ||||||||||| |||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  ||||||||    
T  44254095 gaaatgttaacaagtgcccttaagacatt-tttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattggaaattgaagtttttg 44254193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 521 - 591
Target Start/End: Original strand, 34336470 - 34336540
Alignment:
Q  521 tttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  34336470 tttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttga 34336540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 527 - 591
Target Start/End: Complemental strand, 15271121 - 15271057
Alignment:
Q  527 aactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||    
T  15271121 aactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattggaaattcgagtttttga 15271057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 516 - 591
Target Start/End: Complemental strand, 42704419 - 42704344
Alignment:
Q  516 cattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||||||  ||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||| ||||||||||    
T  42704419 cattgtttactaactttaaatagtaagtttttgtcaaaatttatgaaattaatgcattggagattggagtttttga 42704344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 527 - 592
Target Start/End: Complemental strand, 9774850 - 9774785
Alignment:
Q  527 aactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttgat 592  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||  ||||||||||    
T  9774850 aactttaaatagtaaatttttgtcaaagcttatgaaatcaatgcattgaaaattatagtttttgat 9774785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 589
Target Start/End: Original strand, 38236248 - 38236322
Alignment:
Q  515 gcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||||||||  |||||||||||||||  |||||| ||| |||||||||||||||||||| || ||||| |||||    
T  38236248 gcattgtttaataactttaaatagtaaaattttgtcaaaatttatgaaatcaatgcattgaaattttgacttttt 38236322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 580
Target Start/End: Complemental strand, 36907902 - 36907850
Alignment:
Q  528 actttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatt 580  Q
    |||||||||||||| ||||| | ||||||| || ||||| |||||||||||||    
T  36907902 actttaaatagtaactttttataaaagtttgtgtaatcattgcattggaaatt 36907850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 505 - 591
Target Start/End: Original strand, 27501716 - 27501802
Alignment:
Q  505 tgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||  |||||||||    
T  27501716 tgcccttaagacattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaattaatgcattggaaattgaagtttttga 27501802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 516 - 591
Target Start/End: Complemental strand, 18375176 - 18375101
Alignment:
Q  516 cattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  18375176 cattgtttagtgactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattgaaaattggagtttttga 18375101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 42154698 - 42154749
Alignment:
Q  203 atgtccattcgaaattgtcgagcaatgaccatgcaaaatatccttttacatt 254  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42154698 atgtccattcaaaattgtcgagcaatgaccatgcaaaatatccttttacatt 42154749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 42164856 - 42164899
Alignment:
Q  207 ccattcgaaattgtcgagcaatgaccatgcaaaatatcctttta 250  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  42164856 ccattcaaaattgtcgagcaatgaccatgcaaaatatcctttta 42164899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 537 - 591
Target Start/End: Original strand, 44330642 - 44330696
Alignment:
Q  537 agtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||    
T  44330642 agtaagtttttatcaaaatttatgaaatcaatgcattggaaattggagtttttga 44330696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 537 - 591
Target Start/End: Original strand, 44365416 - 44365470
Alignment:
Q  537 agtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| ||||||||||    
T  44365416 agtaagtttttatcaaaatttatgaaatcaatgcattggaaattggagtttttga 44365470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 42292556 - 42292497
Alignment:
Q  207 ccattcgaaattgtcgagcaatgaccatgcaaaatatccttttacattcacaccatccct 266  Q
    |||||| ||||||||||| || |||||||||||||||||||||| ||| || ||||||||    
T  42292556 ccattcaaaattgtcgagaaacgaccatgcaaaatatccttttatatttacgccatccct 42292497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 591
Target Start/End: Original strand, 32493101 - 32493140
Alignment:
Q  552 aagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  32493101 aagtttatgaaatcaatgcaatggaaattggagtttttga 32493140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 18805858 - 18805805
Alignment:
Q  207 ccattcgaaattgtcgagcaatgaccatgcaaaatatccttttacattcacacc 260  Q
    |||||| ||||||||||  |  ||||||||||||||||||| ||||||||||||    
T  18805858 ccattcaaaattgtcgaaaagggaccatgcaaaatatccttgtacattcacacc 18805805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 505 - 589
Target Start/End: Complemental strand, 24754053 - 24753969
Alignment:
Q  505 tgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    |||||||| |||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||  |||||||    
T  24754053 tgcccttagggcattgtttagaaactttaaatagtaaatttttatgaaagtttatgaaatcaatgcattggaaattaaagttttt 24753969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 527 - 591
Target Start/End: Original strand, 30161350 - 30161414
Alignment:
Q  527 aactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  30161350 aactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattgtaaattggagtttttga 30161414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 517 - 580
Target Start/End: Complemental strand, 5047317 - 5047254
Alignment:
Q  517 attgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatt 580  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5047317 attgtttagtaactttaaatagtaagttttttttaaagtttatgaaatcaatgcattggaaatt 5047254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 514 - 589
Target Start/End: Complemental strand, 54495597 - 54495522
Alignment:
Q  514 ggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    |||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||    
T  54495597 ggcattgtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattgaaaattggagttttt 54495522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 518 - 591
Target Start/End: Original strand, 20180217 - 20180290
Alignment:
Q  518 ttgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||| ||||||||||    
T  20180217 ttgtttaggaactttaaatagtaaatttttgtcaaagtttatgaaattaatgcattgaaaattggagtttttga 20180290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 527 - 592
Target Start/End: Original strand, 46088519 - 46088584
Alignment:
Q  527 aactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttgat 592  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||    
T  46088519 aactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttgat 46088584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 492 - 592
Target Start/End: Complemental strand, 10042985 - 10042884
Alignment:
Q  492 gaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttg 590  Q
    |||||||||||  ||||| |||| ||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||| | |||  ||||||||    
T  10042985 gaaatgttaacaagtgcctttaaagcattgtttaataactttaaatagtaagtttttattaaaatttatgaaatcaatgcattgaacattgaagtttttg 10042886  T
Q  591 at 592  Q
    ||    
T  10042885 at 10042884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 516 - 591
Target Start/End: Original strand, 21988454 - 21988530
Alignment:
Q  516 cattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattgg-aaatttgagtttttga 591  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||    
T  21988454 cattgtttaataactttaaatagtaagtttttgtcaaagtttatgaaatcaatacattggaaaattggagtttttga 21988530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 510 - 589
Target Start/End: Complemental strand, 46521624 - 46521545
Alignment:
Q  510 ttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||| ||||||||||  |||||||||| ||| |||||||||||||||||||||||||||||||  ||||| ||||||||    
T  46521624 ttaagacattgtttagtgactttaaataataaatttttgttaaagtttatgaaatcaatgcattaaaaattggagttttt 46521545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 362 - 468
Target Start/End: Original strand, 25044878 - 25044984
Alignment:
Q  362 tacttgattgcagatttaagataatatagatgattataaaagtaatcaatcctggctgtatctgcaagggcttcttcaagtgagagtgttggatcattga 461  Q
    ||||||||||||| || ||||||||| ||||||  ||||||||||||||| |||   ||||||  ||||| ||||||||| || ||||||||||||||||    
T  25044878 tacttgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgagagtatctataagggattcttcaagcgacagtgttggatcattga 25044977  T
Q  462 gctcatc 468  Q
     ||||||    
T  25044978 actcatc 25044984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 536 - 586
Target Start/End: Original strand, 23135445 - 23135495
Alignment:
Q  536 tagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtt 586  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  23135445 tagtaagtttttgttaaagtttatgaaattaatgcatcggaaatttgagtt 23135495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 514 - 591
Target Start/End: Original strand, 5091833 - 5091909
Alignment:
Q  514 ggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||||||||| ||||||||||| ||| ||||||||||| |||||| ||||||||||||| |||||  |||||||||    
T  5091833 ggcattgtttagtaactttaaataataaatttttgttaaattttatg-aatcaatgcattgaaaattgaagtttttga 5091909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 591
Target Start/End: Complemental strand, 28695869 - 28695805
Alignment:
Q  527 aactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||  |||||||||    
T  28695869 aactttaaatagtaaatttttgtcaaagtttatgaaattaatacattggaaattgaagtttttga 28695805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 461
Target Start/End: Complemental strand, 25002327 - 25002232
Alignment:
Q  366 tgattgcagatttaagataatatagatgattataaaagtaatcaatcctggctgtatctgcaagggcttcttcaagtgagagtgttggatcattga 461  Q
    ||||||||| || ||||||||| ||||||  ||||||||||||||| ||| | ||||||  ||||| |||||||||||| | ||||||||| ||||    
T  25002327 tgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtgataatgttggatcgttga 25002232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 509 - 580
Target Start/End: Original strand, 25751686 - 25751757
Alignment:
Q  509 cttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatt 580  Q
    |||||| |||||||||  ||||||||||||||||||||| |||||| ||||| ||| ||||||||| |||||    
T  25751686 cttaagacattgtttaataactttaaatagtaagtttttattaaagcttatgcaattaatgcattgaaaatt 25751757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 521 - 591
Target Start/End: Original strand, 33266816 - 33266887
Alignment:
Q  521 tttaggaactttaaatagtaagtttttgttaaa-gtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||| |||||||||||||||||| || ||||| ||||||||||||||| |||||||||||  |||||||||    
T  33266816 tttagtaactttaaatagtaagttatttttaaaagtttatgaaatcaatccattggaaattaaagtttttga 33266887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 490 - 555
Target Start/End: Original strand, 23135379 - 23135445
Alignment:
Q  490 gggaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagt 555  Q
    |||||||||||||  |||||||||   |||||||||| |||||||||||||||||||||||||||||    
T  23135379 gggaaatgttaacaagtgcccttagaacattgtttagtaactttaaatagtaagtttttgttaaagt 23135445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 362 - 476
Target Start/End: Original strand, 25016026 - 25016140
Alignment:
Q  362 tacttgattgcagatttaagataatatagatgattataaaagtaatcaatcctggctgtatctgcaagggcttcttcaagtgagagtgttggatcattga 461  Q
    |||||||||||||||  || |||||| |||||   ||||||||||||||| |||   |||||    || |||||||||||||| ||||||||||||||||    
T  25016026 tacttgattgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattga 25016125  T
Q  462 gctcatctataccta 476  Q
    |||| || |||||||    
T  25016126 gctcgtccataccta 25016140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 25044578 - 25044620
Alignment:
Q  225 caatgaccatgcaaaatatccttttacattcacaccatccctg 267  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  25044578 caatgaccatgcaaaatatccctttacattcacaccatccctg 25044620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 49360130 - 49360083
Alignment:
Q  544 ttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  49360130 ttttgtcaaagtgtatgaaatcaatgcattggaaattggagtttttga 49360083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 24984510 - 24984552
Alignment:
Q  225 caatgaccatgcaaaatatccttttacattcacaccatccctg 267  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  24984510 caatgaccatgcaaaatatccctttacattcacaccttccctg 24984552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 589
Target Start/End: Original strand, 48079293 - 48079330
Alignment:
Q  552 aagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  48079293 aagtttatgaaatcaatgcattggaaattggagttttt 48079330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 551 - 591
Target Start/End: Complemental strand, 49587845 - 49587805
Alignment:
Q  551 aaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  49587845 aaagtttatgaaatcaatgcattgaaaattagagtttttga 49587805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 591
Target Start/End: Complemental strand, 20787507 - 20787432
Alignment:
Q  516 cattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||||  | ||||||| ||||  |||||| ||||||||||||||||||| |||| |||||  |||||||||    
T  20787507 cattgtttagtgattttaaatggtaaaattttgtcaaagtttatgaaatcaatgtattgaaaattgaagtttttga 20787432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 580
Target Start/End: Original strand, 34124531 - 34124574
Alignment:
Q  537 agtaagtttttgttaaagtttatgaaatcaatgcattggaaatt 580  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||    
T  34124531 agtaaatttttgtcaaagtttatgaaatcaatgcattgaaaatt 34124574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 580
Target Start/End: Complemental strand, 20022334 - 20022240
Alignment:
Q  487 aatgggaaatgttaacg-gtgcccttaaggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatt 580  Q
    ||||||||||||||||| |||||| |  |||| || ||| | || ||||||||||| ||||| | ||||||| |  |||||||||||||||||||    
T  20022334 aatgggaaatgttaacgagtgcccctggggcactggttaaggaccttaaatagtaattttttatgaaagtttgtacaatcaatgcattggaaatt 20022240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 551 - 591
Target Start/End: Original strand, 20176591 - 20176631
Alignment:
Q  551 aaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||| ||||||||||||||||| ||||| ||||||||||    
T  20176591 aaagttcatgaaatcaatgcattgaaaattggagtttttga 20176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 25167402 - 25167462
Alignment:
Q  207 ccattcgaaattgtcgagcaatgaccatgcaaaatatccttttacattcacaccatccctg 267  Q
    |||||| |||||||| | ||| ||||||||||| ||||| |||||||| |||||| |||||    
T  25167402 ccattcaaaattgtccaacaaagaccatgcaaagtatccctttacatttacaccagccctg 25167462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 580
Target Start/End: Complemental strand, 53261660 - 53261608
Alignment:
Q  528 actttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatt 580  Q
    |||||||||||||| ||||| | ||||||| || ||||| |||||||||||||    
T  53261660 actttaaatagtaactttttataaaagtttgtgtaatcactgcattggaaatt 53261608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 517 - 590
Target Start/End: Complemental strand, 53605767 - 53605694
Alignment:
Q  517 attgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttg 590  Q
    ||||||||| ||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||    
T  53605767 attgtttagtaactttaaatagtaagtttttatcaaagtttataaaatcaatgcattggaaattagagtttttg 53605694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 517 - 591
Target Start/End: Original strand, 53641667 - 53641741
Alignment:
Q  517 attgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||  |||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  53641667 attgtttaataactttgaatagtaagtttttgtcaaagtttatgaaatcaatgcattagaaatttaagtttttga 53641741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 514 - 591
Target Start/End: Original strand, 11465615 - 11465692
Alignment:
Q  514 ggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||||||||||| || |||| |||||  |||||||||    
T  11465615 ggcattatttagaaactttaaatagtaagtttttgtcaaagtttatgaaatcactgtattgaaaattgaagtttttga 11465692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 539 - 591
Target Start/End: Complemental strand, 52299133 - 52299081
Alignment:
Q  539 taagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttga 591  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  52299133 taagtttttgtcaaagtttatgaaatcaatgcattggaaattggagtttttga 52299081  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 514 - 589
Target Start/End: Original strand, 4275197 - 4275272
Alignment:
Q  514 ggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    |||||||||||  ||||||||||| ||||||||||| ||||||||| ||||||||| ||||||| || ||||||||    
T  4275197 ggcattgtttaataactttaaataataagtttttgtcaaagtttataaaatcaatgtattggaagttggagttttt 4275272  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 514 - 569
Target Start/End: Original strand, 30364042 - 30364097
Alignment:
Q  514 ggcattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatg 569  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30364042 ggcattatttagcaactttaaatagcaagtttttgttaaagtttatgaaatcaatg 30364097  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 516 - 589
Target Start/End: Complemental strand, 32734795 - 32734722
Alignment:
Q  516 cattgtttaggaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagttttt 589  Q
    |||| ||||| |||||||| |||||||||||||| ||| |||||||||  ||||||||||||||| ||||||||    
T  32734795 cattatttagtaactttaagtagtaagtttttgtcaaaatttatgaaactaatgcattggaaattagagttttt 32734722  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 592
Target Start/End: Original strand, 52380856 - 52380893
Alignment:
Q  555 tttatgaaatcaatgcattggaaatttgagtttttgat 592  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  52380856 tttatgagatcaatgcattggaaattagagtttttgat 52380893  T

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Target: scaffold0018 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 537 - 592
Target Start/End: Complemental strand, 48872 - 48817
Alignment:
Q  537 agtaagtttttgttaaagtttatgaaatcaatgcattggaaatttgagtttttgat 592  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  48872 agtaagtttttgttaaagtttatgaaatcaatgcattgaaaattgaagtttttgat 48817  T

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Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 49051 - 49015
Alignment:
Q  504 gtgcccttaaggcattgtttaggaactttaaatagta 540  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  49051 gtgccctttaggcattgtttagtaactttaaatagta 49015  T

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