View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_30 (Length: 249)
Name: NF20498_low_30
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_30 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 1395364 - 1395121
Alignment:
| Q |
6 |
agtgagaagaactataaattagtagaaactccacgagtaagtagatctcatccccatttatatttttagatgaacatgtatacaaaggtaaggatgtggc |
105 |
Q |
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| T |
1395364 |
agtgataagaactataaattagtagaaactccacgactaagtagatctcatccccatttatatttttagatgaacatgtatacaaaggtaaggatatggc |
1395265 |
T |
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| Q |
106 |
tgagtaatctactatgaactatcgtctgatgtttatattataattaatcttttgtgaagtttcaaacaaaatgtgacattgagcgcataattgtgtttat |
205 |
Q |
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| T |
1395264 |
tgagtaatctactatgaactatcgtctgatgtttatattataattaatcttttgtgaagtttcaaacaaaatgtgacattgagcgcataattgtgtttat |
1395165 |
T |
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| Q |
206 |
gttatgcataattataagtcttgaactatttataatccaaaatc |
249 |
Q |
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| T |
1395164 |
gttatgcataattataagtcttgaactatttataatccaaaatc |
1395121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 1406453 - 1406345
Alignment:
| Q |
6 |
agtgagaagaactataaattagtagaaactccacgagtaagtagatctcatccccatttatatttttagatgaacatgtatacaaaggtaaggatgtggc |
105 |
Q |
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| T |
1406453 |
agtgataagaactataaattagtagaaactccatgagtaagtagatctcatccccatttatatttttagatgaacatgtatacaaaggtaaggatatggc |
1406354 |
T |
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| Q |
106 |
tgagtaatc |
114 |
Q |
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| T |
1406353 |
tgagtaatc |
1406345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 42408938 - 42408993
Alignment:
| Q |
45 |
agtagatctcatccccatttatatttttagatgaacatgtatacaaaggtaaggatg |
101 |
Q |
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| T |
42408938 |
agtaaatctcatctcaatttat-tttttagatgaacatgtattcaatggtaaggatg |
42408993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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