View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_31 (Length: 240)
Name: NF20498_low_31
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 50648682 - 50648875
Alignment:
| Q |
40 |
tgcgtggatggctcaaatcctcccaagctccccgtgcagtaaattttaaaacatacgacatagaccacatattcattcaagagccaagaaatttgttaaa |
139 |
Q |
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| T |
50648682 |
tgcgtggatggctcaaatcctcccaagctccccgtgcagtaaattttaaaacagacgacatagaccacatattcattcaagagccaagaaatttgttaaa |
50648781 |
T |
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| Q |
140 |
aaggacttccgaagtttcttacaaagattggaagggaagattattaaaatattttagacgcaaaagaaccaaatgtttatgaaa-caaattttc |
232 |
Q |
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| T |
50648782 |
aaggacttgcgaagtttcttacaaagattggaagggaagattattaaaatattttagacgcaaaagaaccagatgtttatgaaaccaaattttc |
50648875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 50642745 - 50642805
Alignment:
| Q |
114 |
attcaagagccaagaaatttgttaaaaaggacttccgaagtttcttacaaagattggaagg |
174 |
Q |
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| T |
50642745 |
attcaatagccaataaatttgttaaaaaggactagcaaagtttcttacaaagattggaagg |
50642805 |
T |
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