View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20498_low_6 (Length: 536)
Name: NF20498_low_6
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Complemental strand, 38784727 - 38784225
Alignment:
| Q |
19 |
cttaacactcttaaacaacaacctcaaataattaactaaagacacaaaccataaggttctacgtttgaaattaacacacattaaagaaaaacaaaaccaa |
118 |
Q |
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| T |
38784727 |
cttaacactcttaaacaacaacctcaaataattaactaaagacacaaaacataaggttctacgtttgaaattaacacacattaaagaaaaacaaaaccaa |
38784628 |
T |
|
| Q |
119 |
ttactggcaatgcatagtcttcccatgaagatcatatctttcatattaatttgatgctcgtggagagagcccaattccgttcgccctttgccttttagag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38784627 |
ttactggcaatgcatagtcttcccatgaagatcatatctttcatattaatttgatgctcgcggagagagcccaattccgttcgccctttgccttttagag |
38784528 |
T |
|
| Q |
219 |
ctccaacactaagtctgcaatttaaaacaagttccaaaatcttagccatgcacttgagttttcattttattttgtttatgctatgctgcttaattacttc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38784527 |
ctccaacactaagtctgcaatttaaaacaagttccaaaatcttagccatgcgcttgagttttcattttattttgtttatgctatgctgcttaattacttc |
38784428 |
T |
|
| Q |
319 |
aattgaattttcaaattctttcatcagttaactaaaacacatttgaaatataatgccaatgcagagtgagatagatgtatgtatgtatgtacgtatgctt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38784427 |
aattgaattttcaaattctttcatcagttaactaaaacacatttgaaatataatgccaatgcagagtgagatagatgtatgtatgtatgtacgtatgctt |
38784328 |
T |
|
| Q |
419 |
acagtccgcatctgttttgatccactgctccatattctcagatgaatcttcactgccactgccaagggtaatttggagttgcctcttcttgcactgtcct |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38784327 |
acagtccgcatctgttttgatccactgctccatattctcagatgaatcttcactgccactgccaagggtaatttggagttgcctcttcttgcattgtcct |
38784228 |
T |
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| Q |
519 |
atg |
521 |
Q |
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||| |
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| T |
38784227 |
atg |
38784225 |
T |
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