View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20498_low_7 (Length: 520)
Name: NF20498_low_7
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20498_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 44093704 - 44093233
Alignment:
| Q |
17 |
aattaattgatgacacacttaagttttgatgtcatattattctagaatgaaaattatgtgttagattacatgggatgannnnnnnagcaccaagttggtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44093704 |
aattaattgatgacacacttaagttttgatgtcatattattctagaatgaaaattatgtgttagattacatgggatgatttttttagcaccaagttggtt |
44093605 |
T |
|
| Q |
117 |
gccattttatatgttgcttttatcctgggtgtatgtatctcctgattctgaagtctttttacaaatttggtgtctgatcaacatttctcttctgcagttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44093604 |
gccattttatatgttgcttttatcctgggtgtatgtatctcctgattctgaagtctttttacaaatttggtgtctgatcaacatttctcttctgcagttt |
44093505 |
T |
|
| Q |
217 |
-----gtaattatgccaatggacaatggtagattaactactgcggacaaaaagagaccatgtattctgggtttggttgtaaacaatggttatccccaatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44093504 |
aatttgtaattatgccaatggacaatggtagattaactactgcggacaaaaagagaccatgtattctgggtttggctgtaaacaatggttatccccaatg |
44093405 |
T |
|
| Q |
312 |
tggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccagaaaattgtgatgtgccagagtttgtttgacccatctggg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44093404 |
tggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccagaaaattgtgatgtgccagagtttgtttgacgcatctggg |
44093305 |
T |
|
| Q |
412 |
ttcttgaggaagtaggtataatcctttgttcttcatttaatcatgtatgtagttgttacgtttattcactga |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44093304 |
ttcttgaggaagtaggtataatcctttgttcttcatttaatcatgtatgtagttgttacgtttattcactga |
44093233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 273 - 438
Target Start/End: Complemental strand, 39279203 - 39279042
Alignment:
| Q |
273 |
tattctgggtttggttgtaaacaatggttatccccaatgtggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccag |
372 |
Q |
| |
|
|||||||| || || ||||| || |||||||| |||||||| |||||||| |||| ||||| || |||| ||||||| |||||||||||||||||| |
|
|
| T |
39279203 |
tattctggtttcggctgtaagcagtggttatcatcaatgtggtcatgtagaatgacacaacgaccaaatttttcatttgagggataccgctggcagccaa |
39279104 |
T |
|
| Q |
373 |
aaaattgtgatgtgccagagtttgtttgacccatctgggttcttgaggaagtaggtataatccttt |
438 |
Q |
| |
|
| ||||||||| ||| ||| |||||||| |||| ||||||||| ||||||||||||| |||| |
|
|
| T |
39279103 |
agaattgtgatatgcaaga----gtttgaccgatctaagttcttgagaaagtaggtataattcttt |
39279042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University