View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20498_low_8 (Length: 513)

Name: NF20498_low_8
Description: NF20498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20498_low_8
NF20498_low_8
[»] chr4 (4 HSPs)
chr4 (18-513)||(36748150-36748645)
chr4 (146-181)||(53673698-53673733)
chr4 (147-176)||(16200022-16200051)
chr4 (150-178)||(47800621-47800649)
[»] chr6 (2 HSPs)
chr6 (415-477)||(12400125-12400187)
chr6 (415-477)||(12253137-12253199)
[»] chr8 (4 HSPs)
chr8 (146-176)||(27028831-27028861)
chr8 (146-176)||(32841348-32841378)
chr8 (144-176)||(1930035-1930067)
chr8 (148-176)||(30251496-30251524)
[»] chr7 (4 HSPs)
chr7 (146-176)||(43648240-43648270)
chr7 (148-176)||(27548263-27548291)
chr7 (148-176)||(33678780-33678808)
chr7 (146-182)||(47130825-47130861)
[»] chr5 (4 HSPs)
chr5 (146-176)||(28776993-28777023)
chr5 (146-176)||(32942618-32942648)
chr5 (146-175)||(4014464-4014493)
chr5 (148-180)||(1636810-1636842)
[»] chr3 (4 HSPs)
chr3 (146-176)||(20669172-20669202)
chr3 (146-176)||(46886732-46886762)
chr3 (146-179)||(21367664-21367697)
chr3 (148-176)||(44747450-44747478)
[»] chr2 (1 HSPs)
chr2 (146-176)||(18066128-18066158)
[»] chr1 (4 HSPs)
chr1 (148-178)||(7028283-7028313)
chr1 (146-176)||(7137038-7137068)
chr1 (146-175)||(4548722-4548751)
chr1 (147-175)||(12593494-12593522)


Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 36748150 - 36748645
Alignment:
Q  18 atcacattcattaagcatctctttatttattaagttttgtttaatttgactcatttgaacttgttatctactaagatcagcacttgttgtgcgacggttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36748150 atcacattcattaagcatctctttatttattaagttttgtttaatttgactcatttgaacttattatctactaagatcagcacttgttgtgcgacggttt 36748249  T
Q  118 aagaaagctttatgaaagaaacttacggtctccaagatagcttatgaaaacagcttatacataataagcacttttataagaagtgcttatgctataaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36748250 aagaaagctttatgaaagaaacttacggtctccaagatagcttatgaaaacagcttatacataataagcacttttataagaagtgcttatgctataaaaa 36748349  T
Q  218 cttattaaattgatcatccaaacaaggcttaagatattagtccaaacaacatgaaaccaatcttttctgtggatcatgatataagcaaagctatgaatca 317  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36748350 cttattaaattgatcatctaaacaaggcttaagatattagtccaaacaacatgaaaccaatcttttctgtggatcatgatataagcaaatctatgaatca 36748449  T
Q  318 aaaagtgtatttgatttcatataacaacacaagaaaaaccatgatattgatgaaatgcataaactcaagaaataaaaggctatatatagtaatagtatac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36748450 aaaagtgtatttgatttcatataacaacacaagaaaaaccatgatattgatgaaatgcataaactcaagaaataaaaggctatatatagtaatagtatac 36748549  T
Q  418 ctttccaagtgtataggcaagagcagcaccagcaactccagcacctacaacaatgatatctgtttctccaacaatatcttgtgagcaaattccatt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  36748550 ctttccaagtgtataggcaagagcagcaccagcaactccagcacctacaatgatgatatctgtttctccaacaatctcttgtgagcaaattccatt 36748645  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 53673698 - 53673733
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttatacataa 181  Q
    ||||||||||||||||||||||||| ||||||||||    
T  53673698 tctccaagatagcttatgaaaacagtttatacataa 53673733  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 176
Target Start/End: Original strand, 16200022 - 16200051
Alignment:
Q  147 ctccaagatagcttatgaaaacagcttata 176  Q
    ||||||||||||||||||||||||||||||    
T  16200022 ctccaagatagcttatgaaaacagcttata 16200051  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 178
Target Start/End: Complemental strand, 47800649 - 47800621
Alignment:
Q  150 caagatagcttatgaaaacagcttataca 178  Q
    |||||||||||||||||||||||||||||    
T  47800649 caagatagcttatgaaaacagcttataca 47800621  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 477
Target Start/End: Complemental strand, 12400187 - 12400125
Alignment:
Q  415 tacctttccaagtgtataggcaagagcagcaccagcaactccagcacctacaacaatgatatc 477  Q
    ||||||||||||||| || |||||||||| |||||||||||||||||||||||  ||||||||    
T  12400187 tacctttccaagtgtgtaagcaagagcagaaccagcaactccagcacctacaatgatgatatc 12400125  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 477
Target Start/End: Original strand, 12253137 - 12253199
Alignment:
Q  415 tacctttccaagtgtataggcaagagcagcaccagcaactccagcacctacaacaatgatatc 477  Q
    ||||||||||||||| || |||||||||| ||||||||| |||||||||||||  ||||||||    
T  12253137 tacctttccaagtgtgtaagcaagagcagaaccagcaacaccagcacctacaatgatgatatc 12253199  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 176
Target Start/End: Complemental strand, 27028861 - 27028831
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||||    
T  27028861 tctccaagatagcttatgaaaacagcttata 27028831  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 176
Target Start/End: Original strand, 32841348 - 32841378
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||||    
T  32841348 tctccaagatagcttatgaaaacagcttata 32841378  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 1930067 - 1930035
Alignment:
Q  144 ggtctccaagatagcttatgaaaacagcttata 176  Q
    |||| ||||||||||||||||||||||||||||    
T  1930067 ggtcaccaagatagcttatgaaaacagcttata 1930035  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 30251496 - 30251524
Alignment:
Q  148 tccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||    
T  30251496 tccaagatagcttatgaaaacagcttata 30251524  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 176
Target Start/End: Complemental strand, 43648270 - 43648240
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||||    
T  43648270 tctccaagatagcttatgaaaacagcttata 43648240  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 27548291 - 27548263
Alignment:
Q  148 tccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||    
T  27548291 tccaagatagcttatgaaaacagcttata 27548263  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 33678808 - 33678780
Alignment:
Q  148 tccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||    
T  33678808 tccaagatagcttatgaaaacagcttata 33678780  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 47130825 - 47130861
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttatacataat 182  Q
    |||||||||||||||||||||||| |||||| |||||    
T  47130825 tctccaagatagcttatgaaaacaacttataaataat 47130861  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 176
Target Start/End: Complemental strand, 28777023 - 28776993
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||||    
T  28777023 tctccaagatagcttatgaaaacagcttata 28776993  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 176
Target Start/End: Complemental strand, 32942648 - 32942618
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||||    
T  32942648 tctccaagatagcttatgaaaacagcttata 32942618  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 175
Target Start/End: Original strand, 4014464 - 4014493
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttat 175  Q
    ||||||||||||||||||||||||||||||    
T  4014464 tctccaagatagcttatgaaaacagcttat 4014493  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 1636810 - 1636842
Alignment:
Q  148 tccaagatagcttatgaaaacagcttatacata 180  Q
    ||||||||| |||||||||||||||||||||||    
T  1636810 tccaagataacttatgaaaacagcttatacata 1636842  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 176
Target Start/End: Complemental strand, 20669202 - 20669172
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||||    
T  20669202 tctccaagatagcttatgaaaacagcttata 20669172  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 176
Target Start/End: Original strand, 46886732 - 46886762
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||||    
T  46886732 tctccaagatagcttatgaaaacagcttata 46886762  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 21367697 - 21367664
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttatacat 179  Q
    |||||||||||||||||||||||| |||||||||    
T  21367697 tctccaagatagcttatgaaaacaacttatacat 21367664  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 44747450 - 44747478
Alignment:
Q  148 tccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||    
T  44747450 tccaagatagcttatgaaaacagcttata 44747478  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 176
Target Start/End: Complemental strand, 18066158 - 18066128
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||||    
T  18066158 tctccaagatagcttatgaaaacagcttata 18066128  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 7028313 - 7028283
Alignment:
Q  148 tccaagatagcttatgaaaacagcttataca 178  Q
    |||||||||||||||||||||||||||||||    
T  7028313 tccaagatagcttatgaaaacagcttataca 7028283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 176
Target Start/End: Original strand, 7137038 - 7137068
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttata 176  Q
    |||||||||||||||||||||||||||||||    
T  7137038 tctccaagatagcttatgaaaacagcttata 7137068  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 4548751 - 4548722
Alignment:
Q  146 tctccaagatagcttatgaaaacagcttat 175  Q
    ||||||||||||||||||||||||||||||    
T  4548751 tctccaagatagcttatgaaaacagcttat 4548722  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 12593494 - 12593522
Alignment:
Q  147 ctccaagatagcttatgaaaacagcttat 175  Q
    |||||||||||||||||||||||||||||    
T  12593494 ctccaagatagcttatgaaaacagcttat 12593522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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