View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20499_high_2 (Length: 375)

Name: NF20499_high_2
Description: NF20499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20499_high_2
NF20499_high_2
[»] chr3 (19 HSPs)
chr3 (1-358)||(40763245-40763606)
chr3 (153-262)||(36480736-36480847)
chr3 (197-262)||(3901568-3901633)
chr3 (186-261)||(11532499-11532574)
chr3 (158-254)||(29955045-29955143)
chr3 (158-254)||(30004199-30004297)
chr3 (151-259)||(32880999-32881109)
chr3 (158-255)||(36007389-36007488)
chr3 (153-228)||(14345180-14345257)
chr3 (214-259)||(799147-799192)
chr3 (186-262)||(1753315-1753391)
chr3 (200-252)||(37189222-37189274)
chr3 (207-261)||(40554123-40554177)
chr3 (158-228)||(19158692-19158763)
chr3 (197-261)||(3901499-3901563)
chr3 (198-262)||(16729172-16729236)
chr3 (186-262)||(19560628-19560704)
chr3 (214-262)||(36480706-36480754)
chr3 (141-262)||(51541262-51541385)
[»] chr2 (21 HSPs)
chr2 (153-262)||(3466416-3466527)
chr2 (158-261)||(16209375-16209480)
chr2 (158-262)||(42094237-42094342)
chr2 (141-261)||(42029342-42029464)
chr2 (153-261)||(44247538-44247648)
chr2 (186-258)||(18719734-18719806)
chr2 (153-262)||(25666827-25666938)
chr2 (153-261)||(2683405-2683515)
chr2 (153-228)||(4237279-4237356)
chr2 (213-262)||(9430228-9430277)
chr2 (217-261)||(23001430-23001474)
chr2 (201-261)||(42251242-42251302)
chr2 (153-261)||(42251163-42251273)
chr2 (153-228)||(1469768-1469845)
chr2 (215-257)||(8090937-8090979)
chr2 (201-259)||(33171678-33171736)
chr2 (212-262)||(42029432-42029482)
chr2 (186-263)||(1930668-1930745)
chr2 (214-262)||(1469738-1469786)
chr2 (198-262)||(12703471-12703535)
chr2 (214-262)||(12779742-12779790)
[»] chr8 (13 HSPs)
chr8 (151-263)||(40175921-40176035)
chr8 (153-262)||(2288598-2288709)
chr8 (190-262)||(40694681-40694753)
chr8 (200-262)||(17893316-17893378)
chr8 (213-262)||(20271104-20271153)
chr8 (213-262)||(21057732-21057781)
chr8 (141-262)||(42072661-42072782)
chr8 (215-262)||(35586496-35586543)
chr8 (153-251)||(24306275-24306374)
chr8 (213-262)||(36009913-36009962)
chr8 (186-259)||(38835002-38835075)
chr8 (186-262)||(34504441-34504517)
chr8 (214-262)||(36914889-36914937)
[»] chr4 (17 HSPs)
chr4 (158-262)||(2324757-2324863)
chr4 (153-262)||(33414002-33414113)
chr4 (153-262)||(21433902-21434013)
chr4 (153-258)||(31758690-31758797)
chr4 (153-262)||(15134566-15134677)
chr4 (206-262)||(2247579-2247635)
chr4 (161-261)||(16457920-16458022)
chr4 (212-262)||(21433872-21433922)
chr4 (213-262)||(7403174-7403223)
chr4 (201-250)||(41840671-41840720)
chr4 (187-239)||(993239-993291)
chr4 (214-262)||(993289-993337)
chr4 (214-262)||(7403090-7403138)
chr4 (190-262)||(42516513-42516585)
chr4 (153-262)||(52374916-52375027)
chr4 (186-261)||(3688570-3688645)
chr4 (214-258)||(9024002-9024046)
[»] chr1 (15 HSPs)
chr1 (153-247)||(23317923-23318019)
chr1 (153-261)||(34437598-34437707)
chr1 (153-261)||(731359-731468)
chr1 (201-258)||(40669008-40669065)
chr1 (214-263)||(49822620-49822669)
chr1 (214-262)||(34437689-34437737)
chr1 (153-262)||(38663650-38663761)
chr1 (214-261)||(38663743-38663790)
chr1 (153-240)||(2542731-2542820)
chr1 (201-239)||(23317988-23318026)
chr1 (153-247)||(23412779-23412875)
chr1 (215-252)||(31851952-31851989)
chr1 (158-262)||(7444280-7444386)
chr1 (218-262)||(38948188-38948232)
chr1 (141-262)||(49403471-49403594)
[»] chr7 (20 HSPs)
chr7 (153-258)||(26862942-26863049)
chr7 (158-262)||(316393-316499)
chr7 (153-262)||(49106935-49107045)
chr7 (164-262)||(47497740-47497840)
chr7 (153-262)||(12275767-12275878)
chr7 (214-262)||(2276276-2276324)
chr7 (186-262)||(10056687-10056763)
chr7 (153-258)||(24516559-24516666)
chr7 (186-261)||(11201293-11201368)
chr7 (176-258)||(2276329-2276413)
chr7 (186-262)||(5443594-5443669)
chr7 (202-262)||(31042138-31042198)
chr7 (141-228)||(40803177-40803265)
chr7 (153-246)||(45200465-45200560)
chr7 (186-258)||(46074119-46074191)
chr7 (215-262)||(5452667-5452714)
chr7 (212-262)||(3235558-3235608)
chr7 (212-262)||(26647690-26647740)
chr7 (186-262)||(40134450-40134524)
chr7 (153-258)||(18802843-18802950)
[»] chr6 (4 HSPs)
chr6 (153-261)||(24110092-24110196)
chr6 (187-258)||(1473618-1473689)
chr6 (201-258)||(34093891-34093948)
chr6 (214-261)||(1473687-1473735)
[»] chr5 (13 HSPs)
chr5 (153-258)||(25545247-25545354)
chr5 (159-242)||(22399805-22399890)
chr5 (153-258)||(3907683-3907792)
chr5 (158-242)||(41169409-41169495)
chr5 (186-262)||(32309661-32309737)
chr5 (153-262)||(42420016-42420127)
chr5 (214-257)||(13122043-13122086)
chr5 (158-229)||(36005053-36005126)
chr5 (201-239)||(40530052-40530090)
chr5 (186-239)||(3771230-3771283)
chr5 (201-262)||(41169469-41169530)
chr5 (214-262)||(17474865-17474913)
chr5 (153-242)||(27195281-27195372)
[»] scaffold0015 (1 HSPs)
scaffold0015 (199-262)||(201034-201097)
[»] scaffold0620 (1 HSPs)
scaffold0620 (201-258)||(9225-9282)
[»] scaffold0003 (1 HSPs)
scaffold0003 (153-262)||(136350-136461)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 40763245 - 40763606
Alignment:
Q  1 aaattttatgtgattgtttatataaaacagagttagttatttgatagataatttatatataatacatagaatttacaatattttttgtttctaagtaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40763245 aaattttatgtgattgtttatataaaacagagttagttatttgaaagataatttatatataatacatagaatttacaatattttttgtttctaagtaaca 40763344  T
Q  101 tatataattagagaaatgctatgaataaacatttaaaaggacactatttattattgcttaaaattcatatgagatccaccaaatt--tatgggacccgca 198  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||| |||||||||| ||||||  ||||||| || ||    
T  40763345 tatataagtagagaaatgctatgaacaaacatttaaaaggacattattttttattggttaaaattcacatgagatccatcaaatttatatgggatccaca 40763444  T
Q  199 tgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgttatttattatcacattaca----nnnnnnnncttcagt 294  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||             || |||    
T  40763445 tgatttggtggaactcaggtgaattttaataaattaaagagagtatgttgaaaa--gtgtgttatttattatcacattacatttttttttttttttgagt 40763542  T
Q  295 aaattgtcatattacatgtatagctctaaaattcattcttaatacatgaagaattaggaagaat 358  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40763543 aaattatcatattacatgtatagctctaaaattcattcttaatacatgaagaattaggaagaat 40763606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 36480736 - 36480847
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| ||| || ||| |||||||||  ||||||| |||||||| |||| || ||||||||||||| | ||| |||||||| ||||||||    
T  36480736 attggttaaaattcacatgggacccaacaaatttatatgggacccacatgatttggtgggacccatgtgaattttagccaatcaaagagagaatgttgaa 36480835  T
Q  251 aagtgtgtgtta 262  Q
    ||||||||||||    
T  36480836 aagtgtgtgtta 36480847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 3901568 - 3901633
Alignment:
Q  197 catgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||| |||| || ||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  3901568 catgatttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 3901633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 11532499 - 11532574
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtt 261  Q
    ||||||| || |||||||| ||||||| ||||||||||||||| ||| ||||||||| ||||  ||||||||||||    
T  11532499 tatgggatccacatgatttggtggaacccatgtgaattttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 11532574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 29955143 - 29955045
Alignment:
Q  158 ttaaaattcatatgagatccaccaaatttatg--ggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagt 254  Q
    |||||||||||||| |||||| ||||||||||  |||||| ||||||||  ||| || ||||||||||||||| ||| ||| | ||| |||||||||||    
T  29955143 ttaaaattcatatgggatccatcaaatttatgtgggacccacatgatttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaagt 29955045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 30004297 - 30004199
Alignment:
Q  158 ttaaaattcatatgagatccaccaaatttatg--ggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagt 254  Q
    |||||||||||||| |||||| ||||||||||  |||||| ||||||||  ||| || ||||||||||||||| ||| ||| | ||| |||||||||||    
T  30004297 ttaaaattcatatgggatccatcaaatttatgtgggacccacatgatttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaagt 30004199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 32881109 - 32880999
Alignment:
Q  151 ttattgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttg 248  Q
    |||||| |||||||| | | |||| |||||||||||||  |||| || |||||||| |||| || ||||||||| ||||| ||| || ||||||||||||    
T  32881109 ttattggttaaaatttacacgagacccaccaaatttatatgggatccacatgattttgtgggacccatgtgaatattaaccaatcaaggagagtatgttg 32881010  T
Q  249 aaaagtgtgtg 259  Q
    |||| ||||||    
T  32881009 aaaaatgtgtg 32880999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 36007389 - 36007488
Alignment:
Q  158 ttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtg 255  Q
    |||||||||||||| |||||||||||||  |||||| ||| |||||||||  ||  ||||||||||||||||| | | ||||| | | ||||||||||||    
T  36007389 ttaaaattcatatgggatccaccaaatttatatggggcccacatgatttatgggggctcatgtgaattttaaccactcaaagaaaatgtgttgaaaagtg 36007488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 14345180 - 14345257
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaac 228  Q
    |||| ||||||| || |||||| |||||||||||||  ||||||| |||||||| |||| | ||||||||||||||||    
T  14345180 attggttaaaatccacatgagacccaccaaatttatatgggacccacatgatttggtgggattcatgtgaattttaac 14345257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 799192 - 799147
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtg 259  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  799192 catgtgaatttaaactaattaaagagagtgtgttgaaaagtgtgtg 799147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 1753391 - 1753315
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||| || ||||||||  || ||||||||| ||||||||| ||| ||| ||||||| ||||||||||| |||||    
T  1753391 tatgggaaccacatgatttgatgaaactcatgtaaattttaaccaatcaaaaagagtatattgaaaagtgtatgtta 1753315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 37189222 - 37189274
Alignment:
Q  200 gatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaa 252  Q
    |||||||||||| |||||||||||||||| ||| ||||||||| |||| ||||    
T  37189222 gatttagtggaattcatgtgaattttaaccaatcaaagagagtctgttaaaaa 37189274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 40554123 - 40554177
Alignment:
Q  207 tggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtt 261  Q
    |||||||||||||| ||||||| ||| ||||||||| | ||||||| ||||||||    
T  40554123 tggaactcatgtgagttttaaccaatcaaagagagtgtattgaaaattgtgtgtt 40554177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 19158763 - 19158692
Alignment:
Q  158 ttaaaattcatatgagatccaccaaatttatggga--cccgcatgatttagtggaactcatgtgaattttaac 228  Q
    ||||||||||||||| | |||||||||||||  ||  ||| ||| ||||||||| ||||||||||||||||||    
T  19158763 ttaaaattcatatga-acccaccaaatttatatgaaacccacataatttagtgggactcatgtgaattttaac 19158692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 3901563 - 3901499
Alignment:
Q  197 catgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtt 261  Q
    |||||||| |||| || ||||||||||||||| ||| ||||||| | ||||||||| | ||||||    
T  3901563 catgatttggtgggacccatgtgaattttaaccaatcaaagagaatgtgttgaaaaatatgtgtt 3901499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 16729236 - 16729172
Alignment:
Q  198 atgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||| |||| ||||||||| |||||||| ||| ||| | ||||||||||| |||| ||||||    
T  16729236 atgatttggtgggactcatgtgcattttaactaatcaaaaaaagtatgttgaagagtgcgtgtta 16729172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 19560704 - 19560628
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||| |||||||| |||| || ||| ||||||| ||| ||| |||| |||| | |||||||||||| ||||    
T  19560704 tatgggacccacatgatttggtgggacccatatgaatttcaaccaatcaaagcgagtgtattgaaaagtgtgcgtta 19560628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 36480754 - 36480706
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||| ||| ||||||||| ||||| |||| ||||||||    
T  36480754 catgtgaattttaaccaatcaaagagagtgtgttggaaagggtgtgtta 36480706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 51541262 - 51541385
Alignment:
Q  141 acactatttattattgcttaaaattcatatgagatccaccaaa--tttatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaaga 238  Q
    ||||||||| | |||| |||||| ||| ||| || ||||||||  | ||| |||||| |||||||| |||| |||||| ||||||||||| ||| ||| |    
T  51541262 acactatttttgattggttaaaactcacatgtgacccaccaaaagtatataggacccacatgatttggtgggactcatctgaattttaaccaatcaaaaa 51541361  T
Q  239 gagtatgttgaaaagtgtgtgtta 262  Q
     ||| | ||||||| | |||||||    
T  51541362 aagtgtattgaaaaatatgtgtta 51541385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 3466416 - 3466527
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| |||||| ||||||||||  |||||||||| || ||||||||||||| ||||||||||||||| ||| ||||||| ||||||  |    
T  3466416 attggttaaaattcacatgagacccaccaaattcatatgggacccacacgatttagtggaacccatgtgaattttaaccaatcaaagagactatgtttga 3466515  T
Q  251 aagtgtgtgtta 262  Q
    ||||||||||||    
T  3466516 aagtgtgtgtta 3466527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 16209480 - 16209375
Alignment:
Q  158 ttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtg 255  Q
    |||||||||| |||| | |||||||||||||  ||||||  ||  |||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  16209480 ttaaaattcaaatgaaacccaccaaatttatatgggaccgacaaaatttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagtg 16209381  T
Q  256 tgtgtt 261  Q
    ||||||    
T  16209380 tgtgtt 16209375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 42094237 - 42094342
Alignment:
Q  158 ttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtg 255  Q
    |||||||||| ||| || |||||||||||||  ||||||| |||||||| |||| || ||||||||||||||| ||| |||||| || ||||||||||||    
T  42094237 ttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtgggac-catgtgaattttaaccaatcaaagagtgtgtgttgaaaagtg 42094335  T
Q  256 tgtgtta 262  Q
    |||||||    
T  42094336 tgtgtta 42094342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 42029464 - 42029342
Alignment:
Q  141 acactatttattattgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaaga 238  Q
    ||||| ||| |||||| |||||||||| |||||| |||||||||||||  |||  ||||||||||| || | || ||| ||||||||||||||| ||| |    
T  42029464 acacttttttttattggttaaaattcacatgagacccaccaaatttatatggggtccgcatgatttggtaggacccatatgaattttaacaaatcaaata 42029365  T
Q  239 gagtatgttgaaaagtgtgtgtt 261  Q
     ||| ||||||||| ||||||||    
T  42029364 cagtgtgttgaaaaatgtgtgtt 42029342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 44247648 - 44247538
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaattt--atgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| ||| |||||| |||||||  ||||||||| ||| |||| ||||||| ||||||||||| ||| ||| ||||| ||| |||||||    
T  44247648 attggttaaaattcacatgggatccatcaaatttgtatgggacccacataatttggtggaacccatgtgaatttcaaccaatcaaagatagtttgttgaa 44247549  T
Q  251 aagtgtgtgtt 261  Q
    || ||||||||    
T  44247548 aaatgtgtgtt 44247538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 18719806 - 18719734
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgt 258  Q
    |||||||||| |||||||| ||||||||| ||||||||||||| ||| ||| ||||| ||||||||| |||||    
T  18719806 tatgggacccacatgatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 18719734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 25666827 - 25666938
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| |||||| ||||||||||  ||||| |||  |||||||| |||| |  |||||| ||||||||| || ||||||||| |||||||    
T  25666827 attgattaaaattcacatgagacccaccaaatttatatggaacctacatgatttggtgggatccatgtggattttaacacatcaaagagagtgtgttgaa 25666926  T
Q  251 aagtgtgtgtta 262  Q
    || ||| |||||    
T  25666927 aattgtatgtta 25666938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 2683405 - 2683515
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttatg--ggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||||||| || ||||| |||||||   |||||| |||||||| ||||||| ||| | ||||||||| ||| ||| ||||| |  ||||    
T  2683405 attgattaaaattcatatgggacccaccgaatttatactggacccacatgatttggtggaacccatataaattttaaccaatcaaaaagagtgtcgtgaa 2683504  T
Q  251 aagtgtgtgtt 261  Q
    |||||||||||    
T  2683505 aagtgtgtgtt 2683515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 4237279 - 4237356
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaattt--atgggacccgcatgatttagtggaactcatgtgaattttaac 228  Q
    |||| |||||||| | ||| ||||||||||||||  ||||||||| |||||||| |||| || |||||||||||||||    
T  4237279 attggttaaaatttacatgggatccaccaaatttgtatgggacccacatgatttggtggtacccatgtgaattttaac 4237356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 9430228 - 9430277
Alignment:
Q  213 tcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||||||||| ||| ||| ||| |||||||||||||||||||||    
T  9430228 tcatgtgaattttaaccaatcaaatagaatatgttgaaaagtgtgtgtta 9430277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 23001474 - 23001430
Alignment:
Q  217 gtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtt 261  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||    
T  23001474 gtgaattttaaccaatcaaagagagtatgttgaaaaatgtgtgtt 23001430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 42251242 - 42251302
Alignment:
Q  201 atttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtt 261  Q
    |||| ||||| | ||||||||||||||  ||| ||||||||| ||||||||||||||||||    
T  42251242 atttggtggatcccatgtgaattttaatcaatcaaagagagtgtgttgaaaagtgtgtgtt 42251302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 42251273 - 42251163
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| ||| |||||||||||||  ||| || ||| ||| |||| |||| || |||| ||||||||||  || ||||||||| ||| |||    
T  42251273 attgattaaaattcacatgggatccaccaaatttatataggtcccacataatttggtgggacccatgcgaattttaaccgatcaaagagagtgtgtcgaa 42251174  T
Q  251 aagtgtgtgtt 261  Q
    || ||||||||    
T  42251173 aaatgtgtgtt 42251163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 1469768 - 1469845
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaac 228  Q
    |||| |||||||||| |||  |||||||||||||||  ||||||| |||||||| |||| |  |||||||||||||||    
T  1469768 attggttaaaattcacatggaatccaccaaatttatatgggacccacatgattttgtgggatccatgtgaattttaac 1469845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 8090937 - 8090979
Alignment:
Q  215 atgtgaattttaacaaattaaagagagtatgttgaaaagtgtg 257  Q
    ||||||||||||||||||||||  |||| ||||||||||||||    
T  8090937 atgtgaattttaacaaattaaattgagtgtgttgaaaagtgtg 8090979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 33171678 - 33171736
Alignment:
Q  201 atttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtg 259  Q
    |||| |||| || |||||||| |||||| ||| ||||||||| ||||||||||||||||    
T  33171678 atttggtgggacccatgtgaaatttaaccaatcaaagagagtgtgttgaaaagtgtgtg 33171736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 42029432 - 42029482
Alignment:
Q  212 ctcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||||| ||| ||| | ||| |||||||||||||||||||    
T  42029432 ctcatgtgaattttaaccaataaaaaaaagtgtgttgaaaagtgtgtgtta 42029482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 1930745 - 1930668
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgttat 263  Q
    |||||||||| ||| ||||  ||||||  |||||||||||||| ||| ||| ||||| | ||||||| ||||||||||    
T  1930745 tatgggacccacataatttgatggaacatatgtgaattttaaccaatcaaaaagagtgtcttgaaaaatgtgtgttat 1930668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 1469786 - 1469738
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||| ||||||| ||||| ||||||||| | |||||||    
T  1469786 catgtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgtta 1469738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 12703535 - 12703471
Alignment:
Q  198 atgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||  |||||||||||||||| ||||| ||| ||||| ||| | ||||||| |||||||||    
T  12703535 atgatttgatggaactcatgtgaatattaaccaatcaaagaaagtgtattgaaaaatgtgtgtta 12703471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 12779742 - 12779790
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||| ||||||| ||||| |||||  ||||||||||||    
T  12779742 catgtgaattttaaccaattaaaaagagtgtgttggtaagtgtgtgtta 12779790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 263
Target Start/End: Original strand, 40175921 - 40176035
Alignment:
Q  151 ttattgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttg 248  Q
    |||||| |||||||||| ||| ||||||||||||||||  ||||||| ||| |||| |||| || ||||||||||||||| |||||||  |||| ||||     
T  40175921 ttattggttaaaattcacatgggatccaccaaatttatatgggacccacataatttggtgggacccatgtgaattttaaccaattaaaaggagtgtgtta 40176020  T
Q  249 aaaagtgtgtgttat 263  Q
    |||||||||||||||    
T  40176021 aaaagtgtgtgttat 40176035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 2288709 - 2288598
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| ||| |||||| |||||||||  |||||||   |||||| ||| ||| ||||| ||||||||| ||| ||||||||| ||||  |    
T  2288709 attggttaaaattcacatgggatccatcaaatttatatgggacccatgtgatttggtgaaacccatgtaaattttaaccaatcaaagagagtgtgttcga 2288610  T
Q  251 aagtgtgtgtta 262  Q
    ||||||||||||    
T  2288609 aagtgtgtgtta 2288598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 40694681 - 40694753
Alignment:
Q  190 ggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||| |||||||| |||| || ||||||||||||||| ||| ||| ||||| | |||||||||||||||||    
T  40694681 ggacccacatgatttggtgggacccatgtgaattttaactaataaaaaagagtgtattgaaaagtgtgtgtta 40694753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 17893378 - 17893316
Alignment:
Q  200 gatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||| |||| |||| ||| |||||    
T  17893378 gatttagtggaactcatgtgagttttaactaatcaaagagagtctgttaaaaaatgtatgtta 17893316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 20271104 - 20271153
Alignment:
Q  213 tcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||||||||| ||| ||||||||| |||||||||||| ||||||    
T  20271104 tcatgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgtta 20271153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 21057732 - 21057781
Alignment:
Q  213 tcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||||||||| ||| ||||||||| |||||||||||| ||||||    
T  21057732 tcatgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgtta 21057781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 42072782 - 42072661
Alignment:
Q  141 acactatttattattgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaaga 238  Q
    ||||| ||| |||||| |||||||| | ||| || ||||||||||  |||| |||||  ||||||| |||| || ||||||||| ||||| ||| |||||    
T  42072782 acactcttttttattggttaaaatttacatgggacccaccaaatttatatgagacccatatgatttggtgggacccatgtgaatgttaaccaatcaaaga 42072683  T
Q  239 gagtatgttgaaaagtgtgtgtta 262  Q
    |||| |||||  ||||||||||||    
T  42072682 gagtgtgttg--aagtgtgtgtta 42072661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 35586496 - 35586543
Alignment:
Q  215 atgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||||||  ||||||||||| | |||||||||||||||||||    
T  35586496 atgtgaattttaatcaattaaagagaatgtgttgaaaagtgtgtgtta 35586543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 251
Target Start/End: Complemental strand, 24306374 - 24306275
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||| ||||||||||||| | |||  |||||||||| |||||||| |||||||  |  ||||||| ||| ||| ||||||||| |||||||    
T  24306374 attggttaaaatttatatgagatccacaacattaatatgggaccc-catgatttggtggaaccgagatgaatttcaaccaataaaagagagtgtgttgaa 24306276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 36009913 - 36009962
Alignment:
Q  213 tcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||||||||| ||  ||||||||| ||||| |||||||||||||    
T  36009913 tcatgtgaattttaaccaaccaaagagagtgtgttggaaagtgtgtgtta 36009962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 38835075 - 38835002
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtg 259  Q
    ||||||||||||||||||| |||  || |||||||||||||   ||| ||||||| | |||||||| |||||||    
T  38835075 tatgggacccgcatgatttggtgagacccatgtgaattttagtcaatcaaagagaatgtgttgaaatgtgtgtg 38835002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 34504441 - 34504517
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||| |||||||| |||  || |||| |||||||||| ||| ||| | ||| ||||||||||||| |||||    
T  34504441 tatgggacccacatgatttggtgtgacccatgcgaattttaaccaatcaaaaaaagtgtgttgaaaagtgtatgtta 34504517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 36914937 - 36914889
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||  ||||||||| | ||||||||||| |||||||||    
T  36914937 catgtgaattttaatcaattaaagataatatgttgaaaaatgtgtgtta 36914889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 2324863 - 2324757
Alignment:
Q  158 ttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtg 255  Q
    |||||||| | ||| || |||||||||||||  ||||||| |||||||| ||| ||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  2324863 ttaaaatttacatgggacccaccaaatttatatgggacccacatgatttggtgaaactcatgtgaattttaaccaatcaaagagagtatattgaaaagtg 2324764  T
Q  256 tgtgtta 262  Q
    || ||||    
T  2324763 tgcgtta 2324757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 33414113 - 33414002
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttatg--ggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||||||| || |||||||||||||   |||||| | |||||| |||| |  ||||||||||||||| ||| ||||||||| |||||||    
T  33414113 attgattaaaattcatatgggacccaccaaatttatataggacccacgtgatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaa 33414014  T
Q  251 aagtgtgtgtta 262  Q
    ||||||||||||    
T  33414013 aagtgtgtgtta 33414002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 21433902 - 21434013
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| |||||| |||||||||||||  | ||||| |||||||| |||| |  ||||||||||||||| ||| || |||||| |||||||    
T  21433902 attggttaaaattcacatgagacccaccaaatttatatgagacccacatgatttggtgggatccatgtgaattttaaccaatcaatgagagtgtgttgaa 21434001  T
Q  251 aagtgtgtgtta 262  Q
    |||||| |||||    
T  21434002 aagtgtatgtta 21434013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 31758797 - 31758690
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaattta--tgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| ||||||||| ||||||| ||||||||||||  || ||||| |||||||| ||||| || |||||||||||||| ||| ||| ||| | |||||||    
T  31758797 attgattaaaattcttatgagacccaccaaatttacatgagacccacatgatttggtggagcttatgtgaattttaaccaatcaaatagaatgtgttgaa 31758698  T
Q  251 aagtgtgt 258  Q
    ||||||||    
T  31758697 aagtgtgt 31758690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 15134677 - 15134566
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| ||| ||  ||||||||||||  |||||||  |||||||||| | || ||||||||||||||| ||| ||||||| | |||||||    
T  15134677 attggttaaaattcacatgggactcaccaaatttatatgggacccaaatgatttagtcggacccatgtgaattttaaccaataaaagagaatgtgttgaa 15134578  T
Q  251 aagtgtgtgtta 262  Q
    || |||||||||    
T  15134577 aaatgtgtgtta 15134566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 2247635 - 2247579
Alignment:
Q  206 gtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||    
T  2247635 gtggatctcgtgtgaattttaatcaattaaagagagtgtgttgaaaagtgtgtgtta 2247579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 16458022 - 16457920
Alignment:
Q  161 aaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgt 258  Q
    |||||||| ||||| |||||||||||||  ||||||| ||||||||  ||| |  ||||||||||||||| ||| ||||||||| ||||  ||| |||||    
T  16458022 aaattcatgtgagacccaccaaatttatatgggacccacatgatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttagaaaatgtgt 16457923  T
Q  259 gtt 261  Q
    |||    
T  16457922 gtt 16457920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 21433922 - 21433872
Alignment:
Q  212 ctcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||||| ||| ||||||||| ||||||||| |||||||||    
T  21433922 ctcatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgtta 21433872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 7403174 - 7403223
Alignment:
Q  213 tcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||||||||| ||| ||||||||| ||||||| |||||||||||    
T  7403174 tcatgtgaattttaaccaatcaaagagagtgtgttgaatagtgtgtgtta 7403223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 41840671 - 41840720
Alignment:
Q  201 atttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||||||||||||||||||||||||||| ||| ||| ||||| |||||||    
T  41840671 atttagtggaactcatgtgaattttaaccaatcaaatagagtgtgttgaa 41840720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 993291 - 993239
Alignment:
Q  187 atgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagag 239  Q
    ||||||||| |||||||| |||| |||||||||||||||||| ||| ||||||    
T  993291 atgggacccacatgatttggtgggactcatgtgaattttaaccaatcaaagag 993239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 993289 - 993337
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||| |||||||| ||||||||| ||||| |||||||||||||    
T  993289 catgtgaattctaacaaatcaaagagagtttgttggaaagtgtgtgtta 993337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 7403138 - 7403090
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||| ||||||| |||||||||||||||| | ||||||||||||||    
T  7403138 catgtgagttttaaccaattaaagagagtatgataaaaagtgtgtgtta 7403090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 42516513 - 42516585
Alignment:
Q  190 ggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||| |||| |||||||  ||| |||||||||| ||| || |||||||| | |||||||||||||||||||    
T  42516513 ggacccacatggtttagtgtgacttatgtgaatttaaaccaaataaagagaatgtgttgaaaagtgtgtgtta 42516585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 52375027 - 52374916
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| ||  |||||| |||||||||  ||||||| ||| |||| |||  |  ||||||||||||||   || ||||||||| |||||||    
T  52375027 attggttaaaattcacatttgatccatcaaatttatacgggacccacataatttggtgagatccatgtgaattttaatctatcaaagagagtgtgttgaa 52374928  T
Q  251 aagtgtgtgtta 262  Q
    ||||||||||||    
T  52374927 aagtgtgtgtta 52374916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 3688645 - 3688570
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtt 261  Q
    |||||||||| |||||||| |||  || ||||||||||||||| ||| ||||| | | ||||||||| ||||||||    
T  3688645 tatgggacccacatgatttggtgagacccatgtgaattttaactaatcaaagaaaatgtgttgaaaaatgtgtgtt 3688570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 9024002 - 9024046
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgt 258  Q
    ||||| ||||||||||||| ||||||| | |||||||||||||||    
T  9024002 catgtaaattttaacaaatcaaagagaatgtgttgaaaagtgtgt 9024046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 23318019 - 23317923
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgtt 247  Q
    |||| |||||||||| ||||||||||| ||||||||  ||||||| |||||||| |||| ||  ||||||||||||||||||||||| |||| ||||    
T  23318019 attggttaaaattcacatgagatccactaaatttatatgggacccacatgatttggtgggacctatgtgaattttaacaaattaaagggagtgtgtt 23317923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 34437707 - 34437598
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatt-tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaa 251  Q
    |||| |||||||||| ||| |  || ||||||| |||||| ||| |||||||| |||| || ||||||||||||||| ||| ||||||||| ||||||||    
T  34437707 attggttaaaattcacatgggtccccccaaattatatgggtcccacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtttgttgaaa 34437608  T
Q  252 agtgtgtgtt 261  Q
    | ||||||||    
T  34437607 aatgtgtgtt 34437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 731359 - 731468
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| ||||||| |||||||||  |||||||||| |||||||| |||  |||||||| ||||||||| ||| ||| ||| | |||||||    
T  731359 attgattaaaattcacatgagattcaccaaatttatatgggacccacatgatttggtgcgactcatgtaaattttaaccaataaaaaagactttgttgaa 731458  T
Q  251 aagtgtgtgtt 261  Q
    || ||||||||    
T  731459 aa-tgtgtgtt 731468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 40669008 - 40669065
Alignment:
Q  201 atttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgt 258  Q
    |||| ||||||| | ||||||||||||| ||| ||||||||| |||||||||||||||    
T  40669008 atttggtggaacccgtgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgt 40669065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 49822620 - 49822669
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgttat 263  Q
    ||||||||||||||| ||| ||||||||| ||||||||| ||||||||||    
T  49822620 catgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttat 49822669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 34437689 - 34437737
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||| ||| ||||||||| |||||||||||| ||||||    
T  34437689 catgtgaattttaaccaatcaaagagagtgtgttgaaaagtgcgtgtta 34437737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 38663761 - 38663650
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| ||| || ||||||||||  ||| ||||||  ||||||| |||| ||  ||||||||| |||| ||| ||||||||| |||||||    
T  38663761 attggttaaaattcacatgggacccaccaaatttatataggacccatatgatttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttgaa 38663662  T
Q  251 aagtgtgtgtta 262  Q
    || | |||||||    
T  38663661 aaatatgtgtta 38663650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 38663743 - 38663790
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtt 261  Q
    ||||||||||||||| ||||||| ||||||||||||||| || |||||    
T  38663743 catgtgaattttaaccaattaaaaagagtatgttgaaaaatgcgtgtt 38663790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 2542731 - 2542820
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagaga 240  Q
    |||| |||||||| | |||||  |||||||||||||  || |||| |||||||| ||||||  ||||||||||||||| ||| |||||||    
T  2542731 attggttaaaatttacatgaggcccaccaaatttatatggaacccacatgatttggtggaagccatgtgaattttaaccaatcaaagaga 2542820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 23317988 - 23318026
Alignment:
Q  201 atttagtggaactcatgtgaattttaacaaattaaagag 239  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  23317988 atttagtggatctcatgtgaattttaaccaattaaagag 23318026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 23412875 - 23412779
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgtt 247  Q
    |||| |||||||| || |||||| |||||||||  |||  |||||| ||||||| |||||||  ||||||||| |||| ||| ||||| ||||||||    
T  23412875 attgattaaaatttatttgagattcaccaaatttatatatgacccgtatgatttggtggaacctatgtgaattataactaatcaaagaaagtatgtt 23412779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 31851952 - 31851989
Alignment:
Q  215 atgtgaattttaacaaattaaagagagtatgttgaaaa 252  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  31851952 atgtgaattttaacaaatcaaagagagtgtgttgaaaa 31851989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 7444386 - 7444280
Alignment:
Q  158 ttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtgg-aactcatgtgaattttaacaaattaaagagagtatgttgaaaagt 254  Q
    |||||||||| ||| || | |||||||||||  ||||||| |||||||| |||| ||||| | |||||||||||  |||||||| | | ||||||||| |    
T  7444386 ttaaaattcacatgggacctaccaaatttatatgggacccacatgatttggtgggaactctt-tgaattttaaccgattaaagaaaatgtgttgaaaaat 7444288  T
Q  255 gtgtgtta 262  Q
    ||||||||    
T  7444287 gtgtgtta 7444280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 38948188 - 38948232
Alignment:
Q  218 tgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||| |||||||| ||||||||| |||| ||||||||||||||    
T  38948188 tgaattctaacaaatcaaagagagtgtgttaaaaagtgtgtgtta 38948232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 49403594 - 49403471
Alignment:
Q  141 acactatttattattgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaaga 238  Q
    ||||| ||| |||||  |||||||||| |||||| ||||||||||  ||||| |||| ||| ||||  ||| ||| |||||||||||||| ||| | | |    
T  49403594 acacttttttttatttgttaaaattcacatgagacccaccaaatttatatggaacccacataatttgatgggacttatgtgaattttaaccaatcataaa 49403495  T
Q  239 gagtatgttgaaaagtgtgtgtta 262  Q
     | |||||| |||| |||||||||    
T  49403494 aaatatgttaaaaaatgtgtgtta 49403471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 26862942 - 26863049
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttatg--ggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| ||| ||| ||||| ||||||   |||||| |||||||| |||| || ||||||||||||||| ||||||||||||| || ||||    
T  26862942 attggttaaaattcacatgggattcaccatatttatataggacccacatgatttggtgggacccatgtgaattttaaccaattaaagagagtttgatgaa 26863041  T
Q  251 aagtgtgt 258  Q
    ||||||||    
T  26863042 aagtgtgt 26863049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 316393 - 316499
Alignment:
Q  158 ttaaaattcatatgagatccaccaaattt--atgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtg 255  Q
    |||||||||| ||||| ||||||||||||  ||| ||||| | ||||||||||||||||||||  |||||| | ||| ||||||| | ||||||||| ||    
T  316393 ttaaaattcacatgagttccaccaaatttgtatgagacccacttgatttagtggaactcatgtagattttatccaatcaaagagaatgtgttgaaaaatg 316492  T
Q  256 tgtgtta 262  Q
    |||||||    
T  316493 tgtgtta 316499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 49106935 - 49107045
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttatg-ggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaa 251  Q
    |||| |||||||||| ||| |  | |||||||||||  || |||||||||||| |||| ||  |||||||||||||| ||| ||||||||| ||||||||    
T  49106935 attgattaaaattcacatgggtcctaccaaatttatatggtcccgcatgatttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttgaaa 49107034  T
Q  252 agtgtgtgtta 262  Q
    |||||||||||    
T  49107035 agtgtgtgtta 49107045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 47497740 - 47497840
Alignment:
Q  164 ttcatatgagatccaccaaattt--atgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtt 261  Q
    |||| |||||| |||||||||||  ||||||||| ||| |||| |||| |||||||||||||||||| ||| ||||| | ||| ||||||| ||||||||    
T  47497740 ttcaaatgagacccaccaaatttgtatgggacccacataatttggtgggactcatgtgaattttaaccaatcaaagaaaatatattgaaaaatgtgtgtt 47497839  T
Q  262 a 262  Q
    |    
T  47497840 a 47497840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 12275767 - 12275878
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||| ||| ||| || |||||||||||||  ||||||| |||||||| |||| || ||| ||||||||||| |||  |||||||| ||||| |    
T  12275767 attggttaaaaatcacatgggacccaccaaatttatatgggacccacatgatttggtgggacccatatgaattttaaccaatcgaagagagtgtgttgga 12275866  T
Q  251 aagtgtgtgtta 262  Q
    ||||||||||||    
T  12275867 aagtgtgtgtta 12275878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 2276324 - 2276276
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  2276324 catgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 2276276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 10056687 - 10056763
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||| |||||||| | || || ||| || |||||||| ||||||||||||| |||||||||||| ||||||    
T  10056687 tatgggacccacatgatttggagggacccatatggattttaactaattaaagagagtgtgttgaaaagtgcgtgtta 10056763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 24516666 - 24516559
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaattta--tgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| ||| ||||||| |||||||  ||| | || |||||||| |||| || ||||||||||||||| ||| ||||| ||||||||| |    
T  24516666 attgattaaaattcacatgggatccactaaatttagatggaatccacatgatttggtgggacccatgtgaattttaaccaatcaaagaaagtatgttgga 24516567  T
Q  251 aagtgtgt 258  Q
    ||| ||||    
T  24516566 aagagtgt 24516559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 11201368 - 11201293
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtt 261  Q
    |||| ||||| | |||||| |||| || ||||||||||||||| ||| ||||||||| ||||| ||||||||||||    
T  11201368 tatgagacccacgtgatttggtgggacccatgtgaattttaactaatgaaagagagtgtgttggaaagtgtgtgtt 11201293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 258
Target Start/End: Original strand, 2276329 - 2276413
Alignment:
Q  176 ccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgt 258  Q
    |||||||||||||  ||||||| ||| |||| |||| | |||||||||||||||| ||||||||| ||| |||| ||| ||||||    
T  2276329 ccaccaaatttataagggacccacataatttggtgggattcatgtgaattttaaccaattaaagatagtgtgttaaaatgtgtgt 2276413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 5443594 - 5443669
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||| || ||| |||| ||||| || |||||||||||||| ||| ||||| ||||||||||||| |||||||||    
T  5443594 tatgggatccacataatttggtggagct-atgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgtta 5443669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 31042198 - 31042138
Alignment:
Q  202 tttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||| ||||||||||||| ||| ||||| | | | |||||||||||||||||    
T  31042198 tttagtggaactcgtgtgaattttaaccaatcaaagataatgtattgaaaagtgtgtgtta 31042138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 40803265 - 40803177
Alignment:
Q  141 acactatttattattgcttaaaattcatatgagatccaccaaatttat-gggacccgcatgatttagtggaactcatgtgaattttaac 228  Q
    ||||||||| |||||| |||||||||| ||| ||||||||||| ||||  ||| | ||||||||| ||||| ||||| | |||||||||    
T  40803265 acactattttttattggttaaaattcacatgggatccaccaaacttatatggatctgcatgatttggtggatctcatataaattttaac 40803177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 45200560 - 45200465
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgt 246  Q
    |||| ||||||||||| |||| |||||||||||  |||| || || |||||||| ||||||| ||| | |||||||| |||| |||||||| ||||    
T  45200560 attgattaaaattcatttgaggtccaccaaatttatatgagatccacatgatttggtggaacccatataaattttaataaatcaaagagagaatgt 45200465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 46074119 - 46074191
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgt 258  Q
    ||||||| || | ||||||  ||| |||||||||||||||||| ||||||||||||| |||| ||| ||||||    
T  46074119 tatgggatccacgtgatttgatgggactcatgtgaattttaaccaattaaagagagtgtgttaaaatgtgtgt 46074191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 5452667 - 5452714
Alignment:
Q  215 atgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||||||| ||| ||||| ||||||||||||| |||||||||    
T  5452667 atgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgtta 5452714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 3235608 - 3235558
Alignment:
Q  212 ctcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||||| ||| ||||||||| | ||| |||||||||||||    
T  3235608 ctcatgtgaattttaaccaatcaaagagagtgtattggaaagtgtgtgtta 3235558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 26647740 - 26647690
Alignment:
Q  212 ctcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||||| ||| ||| ||| ||||||||||| |||||||||    
T  26647740 ctcatgtgaattttaaccaatgaaaaagactatgttgaaaaatgtgtgtta 26647690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 40134450 - 40134524
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||||| ||| |||| |||| || ||||||||||||||| |||   ||||||| ||||| |||||||||||||    
T  40134450 tatgggacccacataatttggtgggacccatgtgaattttaaccaat--cagagagtgtgttggaaagtgtgtgtta 40134524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 18802950 - 18802843
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||||||| ||||| | ||||||||  || |||  ||| |||| |||| ||  |||||||||||||||||| ||  ||||||| |||||    
T  18802950 attggttaaaattcatatgggatccgcgaaatttatatggaaccaacattatttggtgggacctatgtgaattttaacaaatcaactagagtatattgaa 18802851  T
Q  251 aagtgtgt 258  Q
    || |||||    
T  18802850 aaatgtgt 18802843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 24110092 - 24110196
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaa 252  Q
    |||| |||||||||||||| |||||||||||||||  ||||   |||| ||| | |  || ||||||||||||||| ||||||||||||||| |||||||    
T  24110092 attggttaaaattcatatgtgatccaccaaattta--ggacatacatggtttggag--acccatgtgaattttaaccaattaaagagagtatattgaaaa 24110187  T
Q  253 gtgtgtgtt 261  Q
    |||||||||    
T  24110188 gtgtgtgtt 24110196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 1473689 - 1473618
Alignment:
Q  187 atgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgt 258  Q
    ||||||||| |||||||| ||||||| ||||||||||||||| ||| ||||| ||| ||||||||| |||||    
T  1473689 atgggacccacatgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgt 1473618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 34093891 - 34093948
Alignment:
Q  201 atttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgt 258  Q
    |||||||||| | ||||||||||||||| ||| ||||||| |||||||||||||||||    
T  34093891 atttagtggatcccatgtgaattttaaccaatcaaagagattatgttgaaaagtgtgt 34093948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 1473687 - 1473735
Alignment:
Q  214 catgtgaattttaaca-aattaaagagagtatgttgaaaagtgtgtgtt 261  Q
    |||||||||||| | | ||| ||||||||||||||||||||||||||||    
T  1473687 catgtgaatttttaaacaatcaaagagagtatgttgaaaagtgtgtgtt 1473735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 25545247 - 25545354
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||||||| |||||| |||| ||||||||  ||||||  |||||||| |||| ||||| |||||||||||| ||| ||||||||| |||| ||    
T  25545247 attggttaaaattcacatgagacccactaaatttatatgggaccgacatgatttggtgggactcacgtgaattttaaccaatcaaagagagtgtgttaaa 25545346  T
Q  251 aagtgtgt 258  Q
    | ||||||    
T  25545347 atgtgtgt 25545354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 22399805 - 22399890
Alignment:
Q  159 taaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagt 242  Q
    ||||||||| |||||| ||||||||||  |||| |||||  |||||||||| | |||||||||||||||||| ||| |||||||||    
T  22399805 taaaattcacatgagacccaccaaattcatatgagacccagatgatttagtaggactcatgtgaattttaaccaatcaaagagagt 22399890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 3907683 - 3907792
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttg-- 248  Q
    |||| |||||||||| ||| || |||||||||||||  ||||||| |||||||| |||| || ||||||||||||||| ||| ||| ||| | |||||      
T  3907683 attggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgttgga 3907782  T
Q  249 aaaagtgtgt 258  Q
    ||||||||||    
T  3907783 aaaagtgtgt 3907792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 41169495 - 41169409
Alignment:
Q  158 ttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagt 242  Q
    |||||||||| ||| ||||||||||||||||  ||||| |||||||||| ||||||  ||||||||||| ||| ||| ||| |||||    
T  41169495 ttaaaattcacatgtgatccaccaaatttatatgggactcgcatgatttggtggaatccatgtgaatttcaaccaatcaaatagagt 41169409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 32309661 - 32309737
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||||||| | |||||||| |||| | | |||| ||||||||||||| ||||||| |  ||||||||||||||||||    
T  32309661 tatgggactcacatgatttggtgggattaatgtaaattttaacaaatcaaagagaatgcgttgaaaagtgtgtgtta 32309737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 42420127 - 42420016
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| |||||| ||| |||||||||| |||||||||  |||| || |||||||| |||| || || ||   ||||||| ||||||||||| | |||||||    
T  42420127 attggttaaaactcacatgagatccatcaaatttatatgggatccacatgatttggtgggacccacgtatgttttaaccaattaaagagaatgtgttgaa 42420028  T
Q  251 aagtgtgtgtta 262  Q
    || |||||||||    
T  42420027 aaatgtgtgtta 42420016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 13122086 - 13122043
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtg 257  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||    
T  13122086 catgtgaattttacccaatcaaagagagtatgttgaaaagtgtg 13122043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 36005053 - 36005126
Alignment:
Q  158 ttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaaca 229  Q
    |||||||||||||| |||||||||||||  ||||||| || | ||||| ||||  || ||||||||||||||||    
T  36005053 ttaaaattcatatgggatccaccaaatttatatgggatccacgtgattcagtgagacccatgtgaattttaaca 36005126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 40530052 - 40530090
Alignment:
Q  201 atttagtggaactcatgtgaattttaacaaattaaagag 239  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  40530052 atttagtggatctcctgtgaattttaacaaattaaagag 40530090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 3771230 - 3771283
Alignment:
Q  186 tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagag 239  Q
    |||||| |||||||||||| |||||||  |||||||||||||| ||| ||||||    
T  3771230 tatgggtcccgcatgatttggtggaaccaatgtgaattttaaccaatcaaagag 3771283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 41169469 - 41169530
Alignment:
Q  201 atttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    |||| ||||| | |||||||||||||||  || ||||||||| ||||||||| |||||||||    
T  41169469 atttggtggatcacatgtgaattttaacggatcaaagagagtgtgttgaaaaatgtgtgtta 41169530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 17474865 - 17474913
Alignment:
Q  214 catgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||||||  ||| |||||| || |||||||||||||||||||    
T  17474865 catgtgaattttaatcaatcaaagagtgtgtgttgaaaagtgtgtgtta 17474913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 27195281 - 27195372
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatttat--gggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagt 242  Q
    |||| |||||||||| |||   ||||||||||||||  ||| ||  |||||||| |||| |||||||||||||||||  ||| |||||||||    
T  27195281 attgattaaaattcacatggattccaccaaatttatatgggtccgacatgattttgtgggactcatgtgaattttaatcaatcaaagagagt 27195372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 201034 - 201097
Alignment:
Q  199 tgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgtgtta 262  Q
    ||||||||||| || ||||||||| ||||||||| ||||||||| |||||| ||||||||||||    
T  201034 tgatttagtgggacacatgtgaatcttaacaaatcaaagagagtgtgttgataagtgtgtgtta 201097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 9225 - 9282
Alignment:
Q  201 atttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaaaagtgtgt 258  Q
    |||||||||| | ||||||||||||||| ||| ||||||| |||||||||||||||||    
T  9225 atttagtggatcccatgtgaattttaaccaatcaaagagattatgttgaaaagtgtgt 9282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 136350 - 136461
Alignment:
Q  153 attgcttaaaattcatatgagatccaccaaatt--tatgggacccgcatgatttagtggaactcatgtgaattttaacaaattaaagagagtatgttgaa 250  Q
    |||| ||||||||||||||||  ||| ||||||  |||||| | | ||||||||  ||| || ||||||| ||||||| ||| ||| ||||| |||||||    
T  136350 attggttaaaattcatatgagtcccatcaaatttatatgggtcacacatgatttgatgggacacatgtgagttttaaccaatcaaaaagagtgtgttgaa 136449  T
Q  251 aagtgtgtgtta 262  Q
    || |||||||||    
T  136450 aaatgtgtgtta 136461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University