View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20499_low_3 (Length: 373)
Name: NF20499_low_3
Description: NF20499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20499_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 48236738 - 48236418
Alignment:
| Q |
13 |
gcagagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggaga |
112 |
Q |
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| T |
48236738 |
gcagagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggaga |
48236639 |
T |
|
| Q |
113 |
ttgaagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatcacacaccagttgcagt |
212 |
Q |
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| T |
48236638 |
ttgaagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatacggacctgtgtttaaaggtcaccttcatcacacaccagttgcagt |
48236539 |
T |
|
| Q |
213 |
caaactcttaaatcctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgtatcaacattttttctttgtaccctaaatattaacca |
312 |
Q |
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| T |
48236538 |
caaactcttaaatcctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgcatcaacattttttctttgtaccctaaatattaacca |
48236439 |
T |
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| Q |
313 |
tttaataatgcaaattttccc |
333 |
Q |
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||||||||||||||||||||| |
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| T |
48236438 |
tttaataatgcaaattttccc |
48236418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 342 - 373
Target Start/End: Complemental strand, 48236390 - 48236359
Alignment:
| Q |
342 |
aatataacggttatagtggtgctatggcacta |
373 |
Q |
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| T |
48236390 |
aatataacggttatagtggtgctatggcacta |
48236359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 3685864 - 3685920
Alignment:
| Q |
141 |
atcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatca |
197 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
3685864 |
atcaatgaaaataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatca |
3685920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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