View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20499_low_5 (Length: 250)

Name: NF20499_low_5
Description: NF20499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20499_low_5
NF20499_low_5
[»] chr8 (3 HSPs)
chr8 (13-250)||(36993675-36993912)
chr8 (26-180)||(37003983-37004137)
chr8 (202-250)||(37004140-37004188)
[»] chr4 (4 HSPs)
chr4 (139-250)||(13687038-13687149)
chr4 (139-250)||(13688990-13689101)
chr4 (92-197)||(26647904-26648009)
chr4 (156-250)||(22188655-22188749)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 36993675 - 36993912
Alignment:
Q  13 aatattactattccaaataaatttccaattccggtgattgatgagttgtggggagcggtaaaattttcaaaattggatttgaaatcagggtgtcaccaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36993675 aatattactattccaaataaatttccaattccggtgattgatgagttgtggggagcggtaaaattttcaaaattggatttgaaatcagggtgtcaccaga 36993774  T
Q  113 ttcgaacgaaggagggtgatattcaaaaaactgaaatttgaattcatgaaggccattatgaatatctcaaaatgctctttgggttgccaaatgcaccgtc 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36993775 ttcgaacgaaggagggtgatattcaaaaaactgaaatttgaactcatgaaggccattatgaatatctcaaaatgccctttgggttgccaaatgcaccgtc 36993874  T
Q  213 cacgtttcaagcattaatgaatgatatttttaagcctt 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36993875 cacgtttcaagcattaatgaatgatatttttaagcctt 36993912  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 37003983 - 37004137
Alignment:
Q  26 caaataaatttccaattccggtgattgatgagttgtggggagcggtaaaattttcaaaattggatttgaaatcagggtgtcaccagattcgaacgaagga 125  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||| ||||||| |||||| ||    
T  37003983 caaataaatttccaattctggtgattgatgagttgtggggagcggtaaaatttttaagattggatttgaaattagggtatcatcagattcaaacgaaaga 37004082  T
Q  126 gggtgatattcaaaaaactgaaatttgaattcatgaaggccattatgaatatctc 180  Q
    |||||||||||| || |||||| |||||| ||||||||| |||| ||||||||||    
T  37004083 gggtgatattcacaagactgaattttgaactcatgaaggacattctgaatatctc 37004137  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 37004140 - 37004188
Alignment:
Q  202 aatgcaccgtccacgtttcaagcattaatgaatgatatttttaagcctt 250  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||    
T  37004140 aatgcaccgcccacgtttcaagctttgatgaatgatatttttaagcctt 37004188  T

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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 13687149 - 13687038
Alignment:
Q  139 aaaactgaaatttgaattcatgaaggccattatgaatatctcaaaatgctctttgggttgccaaatgcaccgtccacgtttcaagcattaatgaatgata 238  Q
    ||||||||| |||||| |||||||||||||||||||||||||  ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||||||||    
T  13687149 aaaactgaattttgaactcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaatgccccgaccacgtttcaagcattgatgaatgata 13687050  T
Q  239 tttttaagcctt 250  Q
    ||||||||||||    
T  13687049 tttttaagcctt 13687038  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 13689101 - 13688990
Alignment:
Q  139 aaaactgaaatttgaattcatgaaggccattatgaatatctcaaaatgctctttgggttgccaaatgcaccgtccacgtttcaagcattaatgaatgata 238  Q
    ||||||||| |||||| |||||||||||||||||||||||||  ||||| |||||||||  ||||||| ||| |||||||||||||||| ||||||||||    
T  13689101 aaaactgaattttgaactcatgaaggccattatgaatatctcgtaatgccctttgggttaacaaatgccccgaccacgtttcaagcattgatgaatgata 13689002  T
Q  239 tttttaagcctt 250  Q
    ||||||||||||    
T  13689001 tttttaagcctt 13688990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 26647904 - 26648009
Alignment:
Q  92 tgaaatcagggtgtcaccagattcgaacgaaggagggtgatattcaaaaaactgaaatttgaattcatgaaggccattatgaatatctcaaaatgctctt 191  Q
    |||||||||||| ||| |||||||||| ||| |||||||||||||| || |||||| |||||| |||||||||||||||||||||||||  ||||| |||    
T  26647904 tgaaatcagggtatcatcagattcgaatgaaagagggtgatattcacaagactgaattttgaactcatgaaggccattatgaatatctcgtaatgccctt 26648003  T
Q  192 tgggtt 197  Q
    ||||||    
T  26648004 tgggtt 26648009  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 22188655 - 22188749
Alignment:
Q  156 tcatgaaggccattatgaatatctcaaaatgctctttgggttgccaaatgcaccgtccacgtttcaagcattaatgaatgatatttttaagcctt 250  Q
    ||||||||||| |||||||||||||  ||||| ||||| |||  ||||| |||||||  ||||||||||||| ||||||||||||||||| ||||    
T  22188655 tcatgaaggccgttatgaatatctcgtaatgccctttgtgttaacaaatacaccgtctgcgtttcaagcattgatgaatgatatttttaatcctt 22188749  T

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