View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2049_low_3 (Length: 385)
Name: NF2049_low_3
Description: NF2049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2049_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 48074383 - 48074032
Alignment:
| Q |
16 |
acaaaaaatgctcgagcctcaacttgtggaacaacagtgttgaaatttaccaacaagcatattaacatacaagaaacaaaaactactctttggttgtttt |
115 |
Q |
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| T |
48074383 |
acaaaaaatgctcgagcctcaacttgtggaacaacagtgttgaaatttaccaacaagcatattaacatacaagaaacaaaaactactctttggttgtttt |
48074284 |
T |
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| Q |
116 |
ggtccatggatattggat-agtgcctctaaacaaattaatggagagagactaccctttgtttgtgagtatttgtgaatgagtgtgagtgtctttatatag |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48074283 |
ggtccatggatattggattagtgcctctaaacaaat----ggagagagactaccctttgtttgtgagtatttgtgaatgagtgtgagtgtctttatatag |
48074188 |
T |
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| Q |
215 |
aggttatttgttgtgatatttgatgtactgaattaaataacttctgctaccaccccaagtccccaacaaatggacataagtcaccataaataaagaaacg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48074187 |
aggttatttgttgtgatatttgatgtactgaattaaatgacttctgctaccaccccaagtccccaacaaatggacat-agtcaccataaataaagaaacg |
48074089 |
T |
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| Q |
315 |
cctatcaatattattttgaatctaattatattcactagtgttagtgtgtgttaaatg |
371 |
Q |
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| T |
48074088 |
cctatcaatattattttgaatctaattatattcactagtgttagtgtgtgttaaatg |
48074032 |
T |
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