View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2049_low_4 (Length: 335)
Name: NF2049_low_4
Description: NF2049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2049_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 25355762 - 25356077
Alignment:
| Q |
14 |
ttttgatctcgtatcatgctaatgaagaacttcagactaaacatatgttagagactatcatatgattagttccttcttcagccaaaatatttttaccaca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355762 |
ttttgatctcgtatcatgctaatgaagaacttcagactaaacatatgttagagactatcatatgattagttccttcttcagccaaaatatttttaccaca |
25355861 |
T |
|
| Q |
114 |
gacttgacactgtagttattaaacatcaaagtcgataacaattcattttaaacaaagtgttgaactactaatcctatctaaccagctacaactatatcaa |
213 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355862 |
gacttgacactgtagttattaaacatcaaattagataacaattcattttaaacaaagtgttgaactactaatcctatctaaccagctacaactatatcaa |
25355961 |
T |
|
| Q |
214 |
gtagtnnnnnnnnngtctacgtaaggcttactcttttttaagctcaatgaatacatttgcatttcaatcacatgaattccagaacacaatatttgaacga |
313 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355962 |
gtagtaaaaaaaaagtctatgtaaggcttactcttttttaagctcaatgaatacatttgcatttcaatcacatgaattccagaacacaatatttgaacga |
25356061 |
T |
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| Q |
314 |
ttaggagttcatctca |
329 |
Q |
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|||||||||||||||| |
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| T |
25356062 |
ttaggagttcatctca |
25356077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 39212131 - 39212023
Alignment:
| Q |
14 |
ttttgatctcgtatcatgctaatgaagaacttcagactaaacatatgttagagac--tatcatatgattagttccttcttcagccaaaatatttttacca |
111 |
Q |
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|||| ||||| |||||||||||| ||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39212131 |
ttttaatctcatatcatgctaataaaggacttcaaactaagcatatgttagagacactatcatatgattagttccttcttcagccaaaatatttttgcca |
39212032 |
T |
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| Q |
112 |
cagacttga |
120 |
Q |
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||||||||| |
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| T |
39212031 |
cagacttga |
39212023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 27508833 - 27508941
Alignment:
| Q |
14 |
ttttgatctcgtatcatgctaatgaagaacttcagactaaacatatgttagagac--tatcatatgattagttccttcttcagccaaaatatttttacca |
111 |
Q |
| |
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|||| ||||| |||||||||||| ||| |||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
27508833 |
ttttaatctcatatcatgctaataaaggacttcaaactaagcatatgttagagacactatcatatgattagttccttcttcagccaaaatagttttgcca |
27508932 |
T |
|
| Q |
112 |
cagacttga |
120 |
Q |
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||||||||| |
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| T |
27508933 |
cagacttga |
27508941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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