View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2049_low_5 (Length: 309)
Name: NF2049_low_5
Description: NF2049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2049_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 24259550 - 24259802
Alignment:
| Q |
1 |
gtctgtggagaagcacaaggttgtgtttgttaaattgtttcctgaaatatccaatgttacaagagataatcctccaattgcttcttttatcatgcgtgtc |
100 |
Q |
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| T |
24259550 |
gtctgtggagaagcacaaggttgtgtttgttaaattgtttcctgaaatatccaatgttacaagagataatcctccaattgcttcttttatcatgcgtgtc |
24259649 |
T |
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| Q |
101 |
gttagttctgctcatggaaatcgaaaagctctcacacatccaggtaatcaaaattctt---------atttttgttatttcaatttttcttgtggataga |
191 |
Q |
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| T |
24259650 |
gttagttctgctcatggaaatcgaaaagctctcacacatccaggtaatcaaaattcttatttttgcaatttttgttacttcaatttttcttgtggataga |
24259749 |
T |
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| Q |
192 |
gaactatcagatttaatttgtatacactgtcagtttaaaaatgttttacacaa |
244 |
Q |
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| T |
24259750 |
gaactatcagatttaatttgtatacactgtcagtttaaaaatgttttacacaa |
24259802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 1018647 - 1018607
Alignment:
| Q |
203 |
tttaatttgtatacactgtcagtttaaaaatgttttacaca |
243 |
Q |
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| T |
1018647 |
tttaatttatatacactgtcagtgtacaaatgttttacaca |
1018607 |
T |
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