View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2049_low_7 (Length: 277)

Name: NF2049_low_7
Description: NF2049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2049_low_7
NF2049_low_7
[»] chr4 (5 HSPs)
chr4 (31-123)||(46024953-46025052)
chr4 (31-82)||(46306566-46306617)
chr4 (170-209)||(46306624-46306663)
chr4 (50-123)||(46263158-46263238)
chr4 (120-169)||(46302775-46302822)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 46025052 - 46024953
Alignment:
Q  31 acgtccttggccttttgtaaacatatattttaattctgcatctctttc-------tttgtcttttaggaaccaacatccatttgataatcacgacaagaa 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||       |||||||||||||||||||||| |||||||||||||| |||||||    
T  46025052 acgtccttggccttttgtaaacatttattttaattctgcatctcattccctcttttttgtcttttaggaaccaacattcatttgataatcaccacaagaa 46024953  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 46306566 - 46306617
Alignment:
Q  31 acgtccttggccttttgtaaacatatattttaattctgcatctctttctttg 82  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46306566 acgtccttggccttttgtaaacatttattttaattctgcatctctttctttg 46306617  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 46306624 - 46306663
Alignment:
Q  170 tatacactctggccaaaaacatataagttacgcataacat 209  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46306624 tatacactctggccaaaaacatataagttacgcataacat 46306663  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 46263158 - 46263238
Alignment:
Q  50 aacatatattttaattctgcatctctttc-------tttgtcttttaggaaccaacatccatttgataatcacgacaagaa 123  Q
    ||||| ||||||||||||||||||| |||       |||||||||||||||||||||| |||||||||||||| |||||||    
T  46263158 aacatttattttaattctgcatctcattccctcttttttgtcttttaggaaccaacattcatttgataatcaccacaagaa 46263238  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 46302775 - 46302822
Alignment:
Q  120 agaagattattattagtaaacaacatgcagaaagaagttgagtctttata 169  Q
    ||||||||||||  | ||| ||||||||||||||||||||||||||||||    
T  46302775 agaagattatta--aataaccaacatgcagaaagaagttgagtctttata 46302822  T

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