View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2049_low_9 (Length: 228)

Name: NF2049_low_9
Description: NF2049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2049_low_9
NF2049_low_9
[»] chr4 (11 HSPs)
chr4 (1-210)||(2390991-2391200)
chr4 (1-204)||(2381369-2381572)
chr4 (46-210)||(2380108-2380272)
chr4 (6-120)||(2382562-2382676)
chr4 (137-194)||(2367678-2367735)
chr4 (65-165)||(2621192-2621292)
chr4 (140-183)||(1547469-1547512)
chr4 (137-180)||(2373256-2373299)
chr4 (129-204)||(2460589-2460664)
chr4 (136-183)||(12126879-12126926)
chr4 (140-185)||(6007668-6007713)
[»] chr1 (3 HSPs)
chr1 (80-204)||(15837955-15838079)
chr1 (154-201)||(9581951-9581998)
chr1 (155-201)||(9587510-9587556)
[»] chr3 (1 HSPs)
chr3 (140-184)||(513446-513490)
[»] chr8 (2 HSPs)
chr8 (140-185)||(32152209-32152254)
chr8 (139-204)||(39516859-39516924)
[»] chr6 (1 HSPs)
chr6 (140-195)||(10578802-10578857)
[»] chr5 (2 HSPs)
chr5 (140-186)||(32268773-32268819)
chr5 (140-185)||(41900267-41900312)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 2391200 - 2390991
Alignment:
Q  1 ttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatt 100  Q
    |||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391200 ttgggtaagaagcgtgttggggcgattgcattgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatt 2391101  T
Q  101 tgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2391100 tgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttcgagacgatagaaagagacttga 2391001  T
Q  201 aagtatagtg 210  Q
    ||||||||||    
T  2391000 aagtatagtg 2390991  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 2381572 - 2381369
Alignment:
Q  1 ttgggtaagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatt 100  Q
    ||||||||||||| ||||||||||||||||| |||| |||||| |||||||| |||||| ||||||||||||||||||| ||||||| |||||||||| |    
T  2381572 ttgggtaagaagcatgttggggtgattgtgtagagaaaagtaagtgaggttgctggatgcgagattgagggatgtgacactagagaagcgttggaagagt 2381473  T
Q  101 tgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttga 200  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||    
T  2381472 tgaggaatgaaagggatggtttgtagggtgattttgacggagaatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttga 2381373  T
Q  201 aagt 204  Q
    ||||    
T  2381372 aagt 2381369  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 2380272 - 2380108
Alignment:
Q  46 gaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaat 145  Q
    ||||||| ||||||||||||||||||||||||  |||    ||| ||| ||||   ||||||| |||||||||||||||||||||||||||| || ||||    
T  2380272 gaggttgatggatgtgagattgagggatgtgatgttacgacacctttgcaagaggcgaggaataaaagggatggtttgttgggtgattttgagggtgaat 2380173  T
Q  146 cggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagtatagtg 210  Q
    |||| | ||| |||||| |||||||| |||||||||||||| ||||||||||||| |||| ||||    
T  2380172 cggaaactgtaggtgatcgagagtaactgtttggagacgatggaaagagacttgacagtacagtg 2380108  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 2382676 - 2382562
Alignment:
Q  6 taagaagcgtgttggggtgattgtgttgagagaagtaattgaggttggtggatgtgagattgagggatgtgacattagagaaccgttggaagatttgagg 105  Q
    |||||||||||||| ||| ||||| ||||||||||| | ||||||||  |||||||| |||||||||||||||||||| || || | ||||||   ||||    
T  2382676 taagaagcgtgttgaggtaattgtattgagagaagtgagtgaggttgagggatgtgatattgagggatgtgacattagggagccttcggaagaggcgagg 2382577  T
Q  106 aatgaaagggatggt 120  Q
    |||||||||||||||    
T  2382576 aatgaaagggatggt 2382562  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 2367735 - 2367678
Alignment:
Q  137 atggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagag 194  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||||| |||||||    
T  2367735 atggagaatcggagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 2621292 - 2621192
Alignment:
Q  65 ttgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatgg 164  Q
    ||||||||||||| ||||| |||||  | |||||   |||||||||||||||||||||  | || |||| |||||||||| || |||  |||||||||||    
T  2621292 ttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgg 2621193  T
Q  165 a 165  Q
    |    
T  2621192 a 2621192  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 1547512 - 1547469
Alignment:
Q  140 gagaatcggagattgttggtgatggagagtaattgtttggagac 183  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||    
T  1547512 gagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 2373299 - 2373256
Alignment:
Q  137 atggagaatcggagattgttggtgatggagagtaattgtttgga 180  Q
    ||||||||||||||||  |||||||||||||| |||||||||||    
T  2373299 atggagaatcggagatgattggtgatggagagaaattgtttgga 2373256  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 2460589 - 2460664
Alignment:
Q  129 tgattttgatggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagt 204  Q
    |||||||||  ||||||||||||   |||||||||||||| || ||||||||||| || || ||||| ||||||||    
T  2460589 tgattttgagagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagatttgaaagt 2460664  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 12126879 - 12126926
Alignment:
Q  136 gatggagaatcggagattgttggtgatggagagtaattgtttggagac 183  Q
    |||||||||| |||||  ||||||||||||||| ||||||||||||||    
T  12126879 gatggagaataggagacggttggtgatggagagaaattgtttggagac 12126926  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 6007668 - 6007713
Alignment:
Q  140 gagaatcggagattgttggtgatggagagtaattgtttggagacga 185  Q
    |||||||||||| |||||||||||||||| || ||||| |||||||    
T  6007668 gagaatcggagactgttggtgatggagaggaactgtttcgagacga 6007713  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 15838079 - 15837955
Alignment:
Q  80 ttagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatggagagtaattgtttgg 179  Q
    |||| ||||| ||||||||  | ||||||||||||||| ||||| |   ||||||||| |||||||||||||  ||||||||||||||| || |||||||    
T  15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgg 15837980  T
Q  180 agacgatagaaagagacttgaaagt 204  Q
    |||| || || || |||||||||||    
T  15837979 agaccatcgagagggacttgaaagt 15837955  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 9581951 - 9581998
Alignment:
Q  154 gttggtgatggagagtaattgtttggagacgatagaaagagacttgaa 201  Q
    ||||||||| ||||| || ||||||||||||| |||||||||||||||    
T  9581951 gttggtgatagagagaaactgtttggagacgacagaaagagacttgaa 9581998  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 9587510 - 9587556
Alignment:
Q  155 ttggtgatggagagtaattgtttggagacgatagaaagagacttgaa 201  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||||    
T  9587510 ttggtgacggagagaaactgtttggagacgacagaaagagacttgaa 9587556  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 513490 - 513446
Alignment:
Q  140 gagaatcggagattgttggtgatggagagtaattgtttggagacg 184  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||    
T  513490 gagaatcggagattgttggtgatggagagtaactgttttgagacg 513446  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 32152209 - 32152254
Alignment:
Q  140 gagaatcggagattgttggtgatggagagtaattgtttggagacga 185  Q
    |||||||||||| |||||||||||||||| || |||||||||||||    
T  32152209 gagaatcggagactgttggtgatggagaggaactgtttggagacga 32152254  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 39516859 - 39516924
Alignment:
Q  139 ggagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagagacttgaaagt 204  Q
    |||||||| ||||  ||||||||||| ||| |||||| |||||||||| || ||||||||||||||    
T  39516859 ggagaatctgagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagt 39516924  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 10578857 - 10578802
Alignment:
Q  140 gagaatcggagattgttggtgatggagagtaattgtttggagacgatagaaagaga 195  Q
    |||||| ||||| ||||||| |||||||| |||||||||||||||| ||| |||||    
T  10578857 gagaataggagactgttggttatggagaggaattgtttggagacgagagatagaga 10578802  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 32268773 - 32268819
Alignment:
Q  140 gagaatcggagattgttggtgatggagagtaattgtttggagacgat 186  Q
    |||||||| |||  |||||||||||||||||| ||||||||||||||    
T  32268773 gagaatcgaagacggttggtgatggagagtaactgtttggagacgat 32268819  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 41900312 - 41900267
Alignment:
Q  140 gagaatcggagattgttggtgatggagagtaattgtttggagacga 185  Q
    |||||||| ||| |||||||||||||||| || |||||||||||||    
T  41900312 gagaatcgaagagtgttggtgatggagagaaactgtttggagacga 41900267  T

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