View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20500_high_1 (Length: 837)

Name: NF20500_high_1
Description: NF20500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20500_high_1
NF20500_high_1
[»] chr8 (6 HSPs)
chr8 (553-830)||(5439141-5439416)
chr8 (85-280)||(5438676-5438868)
chr8 (353-469)||(5438940-5439056)
chr8 (85-280)||(5432177-5432384)
chr8 (353-442)||(5432463-5432558)
chr8 (11-49)||(5438602-5438640)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 553 - 830
Target Start/End: Original strand, 5439141 - 5439416
Alignment:
Q  553 taatattattatatgtctcacacaaccgataatatcaacattgttagatttgatatatgtaaggatagtnnnnnnntttgtagttacatacacgggatat 652  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||    
T  5439141 taatattattatatgtctcacacaacc-ataatatcaacattgttagatttgatatatgtaaggatagtaaaaaactt-gtagttacatacacgggatat 5439238  T
Q  653 gtatcctaacatatattcatactccttacataatggatgtatgaatgtacatttaacgatagtatatatgaaattcgtacttattaataaattaactata 752  Q
    |||||||||||||||||| | |||||||  |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5439239 gtatcctaacatatattcgtgctccttatgtaatggatgtatgaatatagatttaacgatagtatatatgaaattcgtatttattaataaattaactata 5439338  T
Q  753 ttacttaaatatctttaactaaatatacaagtttcattttaaattgaaaacctagatattgtttatgctattcttctc 830  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5439339 ttgcttaaatatctttaactaaatatacaagtttcattttaaattgaaaacctagatattgtttatgctattcttctc 5439416  T

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Target: chr8; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 85 - 280
Target Start/End: Original strand, 5438676 - 5438868
Alignment:
Q  85 tttttagcttttggggatttagaaaaattacctccaacaccagccaaaagcacaggaaaaacgaacttgtagcgcttaataaagggttccttaggtagcg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  5438676 tttttagcttttggggatttagaaaaattacctccaacaccagccaaaagcacaggaaaaaagaacttgtagtgcttaataaagggttccttaggtagcg 5438775  T
Q  185 gcggcggaggaggaggagccgtttgtgcccccatcgacgacggcgaagagaattcgttcgatttctgcccttgaaattgcttcagttgcgctgtta 280  Q
    |||||   ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5438776 gcggc---ggaggaggagccgtttgtgcccccatcgacgactgcgaagagaactcgttcgatttctgcccttgaaattgcttcagttgcgctgtta 5438868  T

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Target: chr8; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 353 - 469
Target Start/End: Original strand, 5438940 - 5439056
Alignment:
Q  353 tacatattttgggtttgtgattataaagctttggagaagaaccgtgatcagcaccaccttcactcattcttttattcacttttaccctaactctgatcac 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5438940 tacatattttgggtttgtgattataaagctttggagaagaaccgtgatcagcaccaccttcactcattcttttattcacttttaccctaactcagatcac 5439039  T
Q  453 actctacttgtcttgca 469  Q
    |||||||||||||||||    
T  5439040 actctacttgtcttgca 5439056  T

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Target: chr8; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 85 - 280
Target Start/End: Original strand, 5432177 - 5432384
Alignment:
Q  85 tttttagcttttggggatttagaaaaattacctccaacacca---------gccaaaagcacaggaaaaacgaacttgtagcgcttaataaagggttcct 175  Q
    |||||||||||| ||| | |||||||||||||||||| ||||         ||||| |||| |||  |||||||||||||||||||||| ||||||||||    
T  5432177 tttttagctttttgggttgtagaaaaattacctccaataccaaaattgacagccaatagcataggccaaacgaacttgtagcgcttaatgaagggttcct 5432276  T
Q  176 taggtagcggcggcggaggaggaggagccgtttgtgcccccatcgacgacggcgaagagaattcgttcgatttc---tgcccttgaaattgcttcagttg 272  Q
    |||| |||||||| || ||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||   || ||| ||||||||||||| ||    
T  5432277 taggcagcggcggaggtggaggaggagccgtttgagtccccattgacggcggcgaagagaattcgttcgatttctgttggcctcgaaattgcttcagctg 5432376  T
Q  273 cgctgtta 280  Q
    ||||||||    
T  5432377 cgctgtta 5432384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 353 - 442
Target Start/End: Original strand, 5432463 - 5432558
Alignment:
Q  353 tacatattttgggtttgtgattataaagctttggagaagaaccgtgatcagcac------caccttcactcattcttttattcacttttaccctaa 442  Q
    ||||| ||||||||||||||||||| || |||||||||||| | ||||||||||      ||||||||||||||||||| ||||||||||||||||    
T  5432463 tacattttttgggtttgtgattatatagttttggagaagaagcatgatcagcactaccaccaccttcactcattcttttcttcacttttaccctaa 5432558  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 5438602 - 5438640
Alignment:
Q  11 tcaaataaatcaaaccccatttcacaaactcaccaatca 49  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  5438602 tcaaagaaatcaaaccccatttcacaaactcaccaatca 5438640  T

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